OD-seq statistics

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Citations per year

Number of citations per year for the bioinformatics software tool OD-seq
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Tool usage distribution map

This map represents all the scientific publications referring to OD-seq per scientific context
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Associated diseases

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Popular tool citations

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OD-seq specifications

Information


Unique identifier OMICS_09758
Name OD-seq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data OD-seq can take a MSA, distance matrix or set of unaligned sequences as input.
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline Higgins Desmond G.

Publication for OD-seq

OD-seq citation

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LEON BIS: multiple alignment evaluation of sequence neighbours using a Bayesian inference system

2016
BMC Bioinformatics
PMCID: 4936259
PMID: 27387560
DOI: 10.1186/s12859-016-1146-y

[…] ivergent segments in MSAs. The method was used to identify badly annotated introns/exons in sets of orthologous proteins generated by a large-scale avian phylogenomics project. Another recent method, OD-seq [], is designed to find outlier sequences by examining the average distance of each sequence to the rest and represents a useful, fast method for checking very large alignments containing thous […]


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OD-seq institution(s)
UCD Conway Institute of Biomolecular and Biomedical Sciences, University College Dublin, Dublin, Ireland
OD-seq funding source(s)
Funding was provided by Science Foundation Ireland to DGH through PI grant 11/PI/1034.

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