ODIN specifications

Information


Unique identifier OMICS_06638
Name ODIN
Alternative name One-stage DIffereNtial
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux, Mac OS
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.4.1
Stability Stable
Requirements
Numpy, Scipy, Scikit-learn, Pysam, HTSeq, hmmlearn, mpmath, ngslib
Maintained Yes

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Maintainers


  • person_outline Ivan Costa <>
  • person_outline RGT Team <>

Publication for One-stage DIffereNtial

ODIN in publication

PMCID: 5142015
PMID: 26764273
DOI: 10.1093/bib/bbv110

[…] modification enrichment), we observed considerable differences in the number of reported dr (a and b). the sets of dr ranged from no detected differential peak (qchipat) to about 150,000 dr for odin-poisson for the foxa1 data set. five of the methods had a relatively consistent number of dr, in the range of 25,000–35,000 peaks. among the tools that were given the same set of predetermined […]


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ODIN institution(s)
IZKF Computational Biology Research Group, RWTH Aachen University Medical School, Germany; Department of Cell Biology, Institute for Biomedical Engineering, RWTH Aachen University Medical School, Germany; Helmholtz Institute for Biomedical Engineering, RWTH Aachen University, Germany; Aachen Institute for Advanced Study in Computational Engineering Science (AICES), RWTH Aachen University, Germany; Center of Informatics, Federal University of Pernambuco, Brazil
ODIN funding source(s)
Supported by the Interdisciplinary Center for Clinical Research (IZKF Aachen), RWTH Aachen University Medical School, Aachen, Germany, the Excellence Initiative of the German Federal and State Governments and the German Research Foundation through Grant GSC 111, the START-program (AZ 22/13) of the Faculty of Medicine, RWTH Aachen, the donation of U. Lehmann and the German Research Foundation (DFG ZE432/5-2).

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