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OGDRAW computational protocol

OGDRAW specifications

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Unique identifier OMICS_06235
Name OGDRAW
Alternative name OrganellarGenomeDraw
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Medium
Stability Stable
Maintained Yes

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Information


Unique identifier OMICS_06235
Name OGDRAW
Alternative name OrganellarGenomeDraw
Interface Web user interface
Restrictions to use None
Programming languages Perl
Computer skills Basic
Stability Stable
Maintained Yes

Publication for OrganellarGenomeDraw

OGDRAW IN pipelines

 (16)
2018
PMCID: 5833319
PMID: 29718483
DOI: 10.1093/jisesa/iey012

[…] – t]/[a + t]) and gs to cs (gc skew = [g – c]/[g + c]) (perna and kocher 1995). overlapping regions and intergenic spacers between genes were counted manually. circular genome maps were generated by organellargenomedraw (lohse et al. 2013) and revised by hand. the sequence data were deposited in genbank under accession mg460483., to reconstruct the phylogenetic relationships among chrysomeloidae […]

2018
PMCID: 5855747
PMID: 29425128
DOI: 10.3390/ijms19020525

[…] searches and trnascan-se v1.21 (university of california santa cruz, ca, usa) [60] were employed to verify both trna and rrna genes., a graphical cp genome map for c. edulis was completed using ogdraw (organellargenomedraw) (v 1.2, max planck institute of molecular plant physiology, am mühlenberg, germany) [61]. the annotated c. edulis cp genome reported and analyzed herein […]

2018
PMCID: 5855747
PMID: 29425128
DOI: 10.3390/ijms19020525

[…] and trnascan-se v1.21 (university of california santa cruz, ca, usa) [60] were employed to verify both trna and rrna genes., a graphical cp genome map for c. edulis was completed using ogdraw (organellargenomedraw) (v 1.2, max planck institute of molecular plant physiology, am mühlenberg, germany) [61]. the annotated c. edulis cp genome reported and analyzed herein has been deposited […]

2018
PMCID: 5855824
PMID: 29463014
DOI: 10.3390/ijms19020602

[…] [45] and blast. the newly constructed chloroplast genomes were deposited in the ddbj database under the accession numbers lc361349-51. finally, the circular chloroplast genome maps were drawn using ogdraw [46]., the whole chloroplast genome sequences of a. nipponica (strain jo23: ap009369), a. stelleri (ky126841) [23], a. alpina (hf934132) [25], and d. nemorosa (strain jo21: ap009373) […]

2017
PMCID: 5496520
PMID: 28690821
DOI: 10.1002/ece3.3067

[…] and g are the occurrences of the corresponding bases. codon usage was calculated by the codon usage database (http://www.kazusa.or.jp/codon/). the gene map of the complete mitogenome was depicted by ogdraw (http://ogdraw.mpimp-golm.mpg.de/)., to illustrate the phylogenetic relationships among sea anemone, the complete mitogenomes of 23 anthozoa species were downloaded from the genbank database, […]

OGDRAW institution(s)
Max-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam-Golm, Germany

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