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Protocols

OGMP specifications

Information


Unique identifier OMICS_28737
Name OGMP
Alternative name Organelle Genome Megasequencing Program
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline Franz Lang

Publication for Organelle Genome Megasequencing Program

OGMP citations

 (3)
library_books

Microbes, metagenomes and marine mammals: enabling the next generation of scientist to enter the genomic era

2013
BMC Genomics
PMCID: 3766688
PMID: 24007365
DOI: 10.1186/1471-2164-14-600

[…] courses held in Spring 2010–2012. Sequences with homology to the mitochondria were identified by comparison to a local version of the mitochondrial sequence database (http://megasun.bch.umontreal.ca/ogmp/projects/other/mtcomp.html) and separated prior to assembly. The mitochondrial sequences and the remaining (chromosomal sequences) were assembled independently using Newbler version 2.6 (454/Roch […]

library_books

Strikingly Bacteria Like and Gene Rich Mitochondrial Genomes throughout Jakobid Protists

2013
Genome Biol Evol
PMCID: 3590771
PMID: 23335123
DOI: 10.1093/gbe/evt008

[…] with the in-house tool FLIP. Genic and intergenic regions of jakobid mtDNA were extracted using PEPPER, also developed in-house. These software tools are described at http://megasun.bch.umontreal.ca/ogmp/ogmpid.html and are available on request. Sequence identities of intergenic regions were evaluated using FASTA ().To locate potential SD motifs, that is, sequence motifs complementary to the infe […]

call_split

Seventeen New Complete mtDNA Sequences Reveal Extensive Mitochondrial Genome Evolution within the Demospongiae

2008
PLoS One
PMCID: 2444032
PMID: 18628961
DOI: 10.1371/journal.pone.0002723
call_split See protocol

[…] We used flip (http://megasun.bch.umontreal.ca/ogmp/ogmpid.html) to predict ORFs in assembled sequences; similarity searches in local databases and in GenBank using FASTA and NCBI BLAST network service , respectively, to identify them. Protein-co […]


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OGMP institution(s)
Canadian Institute for Advanced Research, Program in Evolutionary Biology, Departement de biochimie, Université de Montréal, Montréal, QC, Canada; Department of Biochemistry, Dalhousie University, Halifax, NS, Canada; Bigelow Laboratories for Ocean Sciences, West Boothbay Harbor, ME, USA
OGMP funding source(s)
Supported by grants (SP-34 and MT-14028) from the Medical Research Council of Canada, and by a grant (GO12984) from the Canadian Genome Analysis and Technology Program (CGAT).

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