OGRe specifications

Information


Unique identifier OMICS_04557
Name OGRe
Alternative name Organellar Genome Retrieval
Restrictions to use None
Maintained No

Publication for Organellar Genome Retrieval

OGRe citations

 (2)
library_books

An integrated pipeline for next generation sequencing and annotation of the complete mitochondrial genome of the giant intestinal fluke, Fasciolopsis buski (Lankester, 1857) Looss, 1899

2013
PeerJ
PMCID: 3828612
PMID: 24255820
DOI: 10.7717/peerj.207

[…] rematodes reported previously (). The mtDNA genome of F. buski was annotated taking F. hepatica as a reference genome using several open source tools viz. Dual Organellar Genome Annotator (DOGMA) (), Organellar Genome Retrieval System (OGRe) () and Mitozoa database (). The newly sequenced and assembled F. buski mtDNA was sketched with GenomeVX at http://wolfe.ucd.ie/GenomeVx/ with annotation files […]

library_books

Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny

2009
BMC Genomics
PMCID: 2785839
PMID: 19922605
DOI: 10.1186/1471-2164-10-534

[…] ore comprises 54 taxa including 31 deuterostomes, 19 protostomes, and four non-bilaterian outgroups (cf. Additional file ). The nucleotide sequences of all mitochondrial genes were retrieved from the Organellar Genome Retrieval (OGRe) database []. For the 13 protein coding genes, sequences were translated, and aligned at the amino-acid level using MAFFT with default parameters []. Ambiguously alig […]

OGRe institution(s)
School of Biological Sciences, University of Manchester, Oxford Road, Manchester, UK

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