OGtree statistics

info info

Citations per year


Tool usage distribution map

info info

Associated diseases


Popular tool citations

chevron_left Phylogenetic inference chevron_right
Want to access the full stats & trends on this tool?

OGtree specifications


Unique identifier OMICS_15386
Name OGtree
Interface Web user interface
Restrictions to use None
Input format FASTA-like
Output data An overlapping-gene distance matrix.
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes



  • person_outline Chin Lung Lu

Publication for OGtree

OGtree citations


A novel bioinformatics pipeline to discover genes related to arbuscular mycorrhizal symbiosis based on their evolutionary conservation pattern among higher plants

BMC Plant Biol
PMCID: 4274732
PMID: 25465219
DOI: 10.1186/s12870-014-0333-0

[…] ogy of the tree is considered in a heuristic process referred to as hierarchical orthology inference. The resulting clusters of homologues protein sequences were saved in a file called eudicotyledons.OGTree.txt (Additional file : File S3, script P0_HieraProcedure). Additional filtering steps were applied to this file using the Newick utilities [] keeping only clusters that contained sequences from […]


Reconstructing genome trees of prokaryotes using overlapping genes

BMC Bioinformatics
PMCID: 2845580
PMID: 20181237
DOI: 10.1186/1471-2105-11-102

[…] roduced by traditional phylogenetic approaches based on ribosomal RNAs and/or concatenation of multiple protein sequences [].To address this problem, we have recently implemented a new server, called OGtree [], which allows evolutionary biologists to reconstruct more reliable genome trees of some prokaryotes by using not only their OG content but also their OG order. It has been widely accepted th […]

Want to access the full list of citations?
OGtree institution(s)
Institute of Bioinformatics, National Chiao Tung University, Hsinchu, Taiwan; Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, Taiwan
OGtree funding source(s)
This work was supported in part by National Science Council of Republic of China under grant NSC96-2221-E- 009-126 and in part by the ATU plan of MOE.

OGtree reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review OGtree