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OikoBase

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Provides information on expressed sequence tags (ESTs), transcripts, proteins and genome-wide expression profiles for the urochordate Oikopleura dioica. OikoBase is a tiling array-based developmental transcriptome genome browser resource that provides transcriptomics data across the animal’s entire life cycle. A BLAST function allows researchers to search homologs of their gene of interest.

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OikoBase classification

OikoBase specifications

Restrictions to use:
None
Data access:
File download, Browse
Maintained:
Yes
Community driven:
No
User data submission:
Not allowed

OikoBase support

Maintainers

  • John Manak <>
  • Eric Thompson <>
  • Mrutyunjaya Parida <>

Additional information

http://oikoarrays.biology.uiowa.edu/Oiko/Tutorial.html

Credits

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Publications

Institution(s)

Computational Biology Unit, University of Bergen, Bergen, Norway; Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen, Norway; Centre for Cancer Biomedicine, Faculty of Medicine, University of Oslo, Oslo, Norway; Department of Biochemistry, Institute for Cancer Research, Norwegian Radium Hospital, Oslo University Hospital, Oslo, Norway; Department of Biology, University of Iowa, Iowa City, IA, USA; Department of Biology, Carver Center for Genomics, Department of Pediatrics, Carver College of Medicine, University of Iowa, Iowa City, IA, USA; Department of Molecular Sciences, Imperial College London and MRC Clinical Sciences Centre, London, UK; Commissariat a l’Energie Atomique (CEA), Genoscope, Evry, France; Department of Biology, University of Bergen, Bergen, Norway

Funding source(s)

Supported by The Norwegian Research Council [183690/S10 NFR-FUGE, 204891/F20 NFR-FRIBIO] and NFR [133335/V40].

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