OikoBase specifications


Unique identifier OMICS_20764
Name OikoBase
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes


  • person_outline John Manak
  • person_outline Eric Thompson
  • person_outline Mrutyunjaya Parida

Additional information


Publication for OikoBase

OikoBase citation


DNA interference mediated screening of maternal factors in the chordate Oikopleura dioica

Sci Rep
PMCID: 5345011
PMID: 28281645
DOI: 10.1038/srep44226

[…] many invertebrates.To identify homologous proteins of β-catenin in O. dioica, tblastn was carried out querying the β-catenin protein sequence of the ascidian Ciona intestinalis (NP_001027779.1) using OikoBase (http://oikoarrays.biology.uiowa.edu/Oiko/index.html). Potential candidates were analysed to generate a phylogenetic tree. Among the maternally expressed genes, two homologues (GSOIDP00011813 […]

OikoBase institution(s)
Computational Biology Unit, University of Bergen, Bergen, Norway; Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen, Norway; Centre for Cancer Biomedicine, Faculty of Medicine, University of Oslo, Oslo, Norway; Department of Biochemistry, Institute for Cancer Research, Norwegian Radium Hospital, Oslo University Hospital, Oslo, Norway; Department of Biology, University of Iowa, Iowa City, IA, USA; Department of Biology, Carver Center for Genomics, Department of Pediatrics, Carver College of Medicine, University of Iowa, Iowa City, IA, USA; Department of Molecular Sciences, Imperial College London and MRC Clinical Sciences Centre, London, UK; Commissariat a l’Energie Atomique (CEA), Genoscope, Evry, France; Department of Biology, University of Bergen, Bergen, Norway
OikoBase funding source(s)
Supported by The Norwegian Research Council [183690/S10 NFR-FUGE, 204891/F20 NFR-FRIBIO] and NFR [133335/V40].

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