Oli specifications

Information


Unique identifier OMICS_20372
Name Oli
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Some protein and RNA sequences.
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

Subtools


  • OliMo
  • OliMoSS

Versioning


No version available

Maintainer


  • person_outline Carmen M Livi

Publication for Oli

Oli citation

library_books

RNA protein binding motifs mining with a new hybrid deep learning based cross domain knowledge integration approach

2017
BMC Bioinformatics
PMCID: 5331642
PMID: 28245811
DOI: 10.1186/s12859-017-1561-8

[…] fusion of 5 independent predictions. Feature-level fusion. This type of fusion strategy is to encode the different sources into feature vectors, which will be concatenated together. For instance, the OliMoSS model has integrated tetranucleotide sequence, binding motifs and secondary structures to predict protein specific interactions on RNAs by simply concatenating the different sources of feature […]

Oli institution(s)
Department of Information Engineering and Computer Science, University of Trento, Trento, Italy

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