Oli statistics

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Citations per year

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Popular tool citations

chevron_left Protein-RNA interactions chevron_right
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Associated diseases

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Oli specifications

Information


Unique identifier OMICS_20372
Name Oli
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Some protein and RNA sequences.
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

Subtools


  • OliMo
  • OliMoSS

Versioning


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Maintainer


  • person_outline Carmen M Livi <>

Publication for Oli

Oli in publications

 (2)
PMCID: 5331642
PMID: 28245811
DOI: 10.1186/s12859-017-1561-8

[…] widely used in the literatures: feature-level fusion. this type of fusion strategy is to encode the different sources into feature vectors, which will be concatenated together. for instance, the olimoss model has integrated tetranucleotide sequence, binding motifs and secondary structures to predict protein specific interactions on rnas by simply concatenating the different sources […]

PMCID: 4719072
PMID: 26041786
DOI: 10.1093/bib/bbv031

[…] in wang et al. [], lncpro [] and rpi-pred [] all follows these lines. the recent pripu method [] differs from the others by using statistical learning methods trained on only positive examples. the oli suite [] trains on high-throughput evidence including par-clip experiments, and used features include sequence composition, predicted secondary structure and presence of motifs., the main concern […]


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Oli institution(s)
Department of Information Engineering and Computer Science, University of Trento, Trento, Italy

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