OLIGO protocols

OLIGO specifications

Information


Unique identifier OMICS_03944
Name OLIGO
Alternative name OLIGO Primer Analysis Software
Software type Package/Module
Interface Command line interface
Restrictions to use License purchase required
Operating system Mac OS, Windows
Programming languages Java
License Commercial
Computer skills Advanced
Version 7
Stability Stable
Free trial Yes
Maintained Yes

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OLIGO IN pipelines

 (4)
2017
PMCID: 5455050
PMID: 28524840
DOI: 10.4103/0366-6999.206348

[…] from the patient and her parents. genomic dna was isolated from peripheral blood leukocytes using a dna extraction kit (omega, d3494-03 blood dna midi kit). six pairs of dna primers designed by oligo primer analysis software v. 7 (molecular biology insights, inc., colorado springs, colorado, usa) were used to sequence the gata3 gene in blood samples. the primers used for amplification […]

2016
PMCID: 5155538
PMID: 27797723
DOI: 10.1242/bio.021071

[…] silver staining. all of the ssr markers were selected from the gramene database (www.gramene.org). primers for the three indel markers, si9337, se29626 and se29688 (table s1), were designed using oligo primer analysis software version 7.0 (molecular biology insights, inc.) based on indels between zs97 and my46 detected by the whole-genome resequencing., total rna was isolated from rice leaves […]

2016
PMCID: 5155538
PMID: 27797723
DOI: 10.1242/bio.021071

[…] sequences of hd2 from the parents were amplified as two overlapping segments by pcr (kod-plus neo, toyobo, japan). the primers used for sequencing, hd2s1 and hd2s2 (table s1), were designed using oligo primer analysis software version 7.0., linkage map construction and qtl analysis were performed for the two bc2f6 and three bc2f7 populations which were segregated for qhd7.2, including g6021, […]

2012
PMCID: 3527549
PMID: 23285081
DOI: 10.1371/journal.pone.0052538

[…] caps markers were visualized on 2% agrose gels using gelred staining. all of the ssr markers were selected from the gramene database (www.gramene.org). the caps and indel markers were designed using oligo primer analysis software version 7.0 [20] based on snps and indels between zs97 and my46 detected by the whole-genome re-sequencing. while si9337 detected a 4-bp indel in the exon 2 of the hd1 […]

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