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OligoFaktory specifications

Information


Unique identifier OMICS_00829
Name OligoFaktory
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Mac OS
Computer skills Advanced
Stability Stable
Maintained Yes

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No version available

Publication for OligoFaktory

OligoFaktory citations

 (3)
library_books

Evidence for Immune Response, Axonal Dysfunction and Reduced Endocytosis in the Substantia Nigra in Early Stage Parkinson’s Disease

2015
PLoS One
PMCID: 4472235
PMID: 26087293
DOI: 10.1371/journal.pone.0128651

[…] as close as possible to the 3’ end of the sequence. Forward and reverse primer sequences were checked for possible secondary structures and dimer formation with the primer analysis tool available at OligoFaktory web portal (http://164.15.232.115/oligofaktory/index.jsp?tool=analysis) and at http://www.eurofinsgenomics.eu. All primers were purchased from Eurogentec S.A. (Liege, Belgium), and suitab […]

library_books

easyPAC: A Tool for Fast Prediction, Testing and Reference Mapping of Degenerate PCR Primers from Alignments or Consensus Sequences

2012
Evol Bioinform Online
PMCID: 3310402
DOI: 10.4137/EBO.S8870

[…] bears a challenge in connection with the controlling of primer characteristics and the assembly of proper degenerate primer pairs.Today, sophisticated tools for primer prediction (eg, Primer3Plus and OligoFaktory) are available providing a comprehensive range of functions including the possibility to controll primer specificity via database search of primer sequences., However, they only support t […]

library_books

An evaluation of custom microarray applications: the oligonucleotide design challenge

2009
Nucleic Acids Res
PMCID: 2665234
PMID: 19208645
DOI: 10.1093/nar/gkp053

[…] of the expected oligonucleotides with our design settings (). Commoligo, OligoArray and Mprime reached more than 90%. OligoPicker, ROSO and PICKY designed between 73% and 88% of our targets. Lastly, OligoFaktory was unable to design more than half of the oligonucleotides we expected. Homogeneous Tm values are ideal to increase sensitivity during the hybridization process (A). When we look at the […]

Citations

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OligoFaktory institution(s)
Unit of Evolutionary Genetics, Institute of Molecular Biology and Medicine, Free University of Brussels, Gosselies, Belgium

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