OligoMiner statistics

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Associated diseases

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OligoMiner specifications


Unique identifier OMICS_20361
Name OligoMiner
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A genomic sequence to be searched for probes.
Input format FASTA
Operating system Unix/Linux
Programming languages Python
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Peng Yin <>
  • person_outline Brian Beliveau <>

Publication for OligoMiner

OligoMiner in publication

PMCID: 5727263
PMID: 29233999
DOI: 10.1038/s41467-017-02028-8

[…] lengthened versions of reported oligonucleotide probes targeting the mouse major satellite, minor satellite, and telomere (fig. ) or pools of “oligopaint” oligonucleotide probes designed using oligominer (fig. ) were used (supplementary tables , )., single-molecule rna fish was performed on hela cells (atcc ccl-2) grown to ~70–90% confluency in a labtek coverglass chamber slide. samples […]

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OligoMiner institution(s)
Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA; Department of Systems Biology, Harvard Medical School, Boston, MA, USA; Department of Genetics, Harvard Medical School, Boston, MA, USA
OligoMiner funding source(s)
Supported by awards from the NIH (NIH 1R01EB018659-01 and NIH 1-U01-MH106011- 01), ONR (N00014-13-1-0593, N00014-14-1-0610, N00014-16-1-2182, N00014-16-1-2410), and NSF (CCF-1317291) and awards from the NIH (DP1GM106412, R01HD091797); by a Damon Runyon Cancer Research Foundation Fellowship; by a Uehara Memorial Foundation Research Fellowship; by Postdoctoral Fellowships from EMBO and the Human Frontier Science Program; by NSF Graduate Research Fellowships.

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