Protocols
OligoSpawn specifications
Information
| Unique identifier | OMICS_26489 |
|---|---|
| Name | OligoSpawn |
| Interface | Web user interface |
| Restrictions to use | None |
| Input format | FASTA |
| Programming languages | PHP |
| Computer skills | Basic |
| Stability | Stable |
| Source code URL | http://www.oligospawn.org/dwn/oligospawn_src.zip |
| Registration required | Yes |
| Maintained | Yes |
Maintainers
- person_outline Stefano Lordi
- person_outline Tao Jiang
- person_outline Jie Zheng
- person_outline Jan Svensson
- person_outline Timothy Close
Information
| Unique identifier | OMICS_26489 |
|---|---|
| Name | OligoSpawn |
| Software type | Application/Script |
| Interface | Command line interface |
| Restrictions to use | None |
| Input format | FASTA |
| Operating system | Unix/Linux |
| Programming languages | C++, PHP |
| License | GNU General Public License version 3.0 |
| Computer skills | Advanced |
| Stability | Stable |
| Source code URL | http://www.oligospawn.org/dwn/oligospawn_src.zip |
| Maintained | Yes |
Download
Versioning
No version available
Maintainers
- person_outline Stefano Lordi
- person_outline Tao Jiang
- person_outline Jie Zheng
- person_outline Jan Svensson
- person_outline Timothy Close
Publication for OligoSpawn
library_books
OligoSpawn: a software tool for the design of overgo probes from large unigene datasets
2006 BMC Bioinformatics
PMCID: 1361790
PMID: 16401345
DOI: 10.1186/1471-2105-7-7
OligoSpawn citation
call_split
A compartmentalized approach to the assembly of physical maps
2009
BMC Bioinformatics
PMCID: 2717093
PMID: 19604400
DOI: 10.1186/1471-2105-10-217
call_split See protocol
[…] We used the genomic data of two plants, namely barley and rice, to compare our compartmentalized approach to the standard FPC assembly.For barley, we used OLIGOSPAWN[] to design 12,467 36-mer oligonucleotide probes from a dataset of 53,799 barley unigenes obtained from HarvEST website []. A unigene is obtained as a product of assembling several ESTs. Pr […]
OligoSpawn institution(s)
Department of Computer Science & Engineering, University of California, Riverside, CA, USA; Department of Botany & Plant Sciences, University of California, Riverside, CA, USA
OligoSpawn funding source(s)
Supported in part by NSF DBI-0321756, NSF CAREER IIS0447773, and USDA/CSREES 2001-52100-11346.
OligoSpawn reviews
Be the first to review OligoSpawn