OLIN protocols

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OLIN specifications

Information


Unique identifier OMICS_02029
Name OLIN
Alternative name Optimised Local Intensity-dependent Normalisation
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.58.0
Stability Stable
Requirements
limma, methods, stats, graphics, grDevices, locfit, R(>=2.10), convert, marray
Maintained Yes

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Documentation


Publication for Optimised Local Intensity-dependent Normalisation

OLIN in pipelines

 (2)
2008
PMCID: 2592712
PMID: 18783608
DOI: 10.1186/gb-2008-9-9-r134

[…] between differently calculated ratio measures and r2 of regression ratio) were eliminated from the analysis, and the data were background corrected with the normexp method and normalized using olin []. between-array normalization was carried out independently for each set of four arrays using the mad method from olin, and a linear model was fitted and corrected with false discovery rate […]

2007
PMCID: 1896016
PMID: 17466076
DOI: 10.1186/gb-2007-8-4-r67

[…] between differently calculated ratio measures and r2 of regression ratio) were eliminated from the analysis, and the data were background corrected with the normexp method and normalized using olin []. between-array normalization was carried out independently for each set of four arrays using the mad method from olin, and a linear model was fitted and corrected with false discovery rate […]


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OLIN in publication

PMCID: 2680204
PMID: 19216778
DOI: 10.1186/1471-2105-10-61

[…] d and f and additional file and ). these results have been confirmed using ebayes test [additional file panels g-l]., in general, we observe that the oslin procedure is essentially equivalent to olin, suggesting that the further scaling factor introduced in oslin is redundant., lowess and olin tend to show similar performances, which implies that the optimal estimate for the smoothness […]


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OLIN institution(s)
Institute for Theoretical Biology, Humboldt-Universit├Ąt, Berlin, Germany

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