OMACC specifications

Information


Unique identifier OMICS_10944
Name OMACC
Alternative name Optical-Map-Assisted Contig Connector
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data OMACC takes as input contig sequences in FASTA format and a contig graph in Newbler format ("454ContigGraph.txt"). OMACC also offers a script to convert the optical map file generated by OpGen, currently the most popular optical mapping platform, into the required format.
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability No
Requirements SOMA
Maintained No

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Publication for Optical-Map-Assisted Contig Connector

OMACC institution(s)
Institute of Biotechnology, National Cheng Kung University, Tainan, Taiwan; Department of Engineering Science, National Cheng Kung University, Tainan, Taiwan; Supercomputing Research Center, National Cheng Kung University, Tainan, Taiwan; Institute of Bioinformatics and Biosignal Transduction, National Cheng Kung University, Tainan, Taiwan
OMACC funding source(s)
This work is supported by National Science Council, Taiwan (NSC 102-2627-B-006-003 and NSC 103-2911-I-006-301).

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