OME Files statistics

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Citations per year

Number of citations per year for the bioinformatics software tool OME Files

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OME Files specifications


Unique identifier OMICS_16792
Name OME Files
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages C++
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 0.3.2
Stability Stable
Maintained Yes




No version available



  • person_outline Jason Swedlow

Publication for OME Files

OME Files citations


An In Vivo Duo color Method for Imaging Vascular Dynamics Following Contusive Spinal Cord Injury

PMCID: 5908407
PMID: 29364252
DOI: 10.3791/56565

[…] ect "file" and then choose previously saved raw data and open all associated line-scan files with the extension name ".ome".Open "Image" and select "Stacks" followed by "images to stack". Convert all OME files into a single image stack TIFF file.Start Matlab software and click "Open", select "LSPIV_parallel.m" code file. Note: Matlab code for LS-PIV can be downloaded at […]


The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging

Genome Biol
PMCID: 1175959
PMID: 15892875
DOI: 10.1186/gb-2005-6-5-r47

[…] se and application server to import, store, process, view and export data. The OME Data Model is also implemented in an Extensible Markup Language (XML) file format that makes it possible to transfer OME files between OME databases and exchange them with other software, including that provided by commercial vendors. OME does not replace or compete with existing commercial software for controlling […]

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OME Files institution(s)
Centre for Gene Regulation & Expression and Division of Computational Biology, University of Dundee, Dundee, Scotland, UK; Glencoe Software, Inc. Seattle, WA, USA
OME Files funding source(s)
Supported by a Wellcome Trust Strategic Award (095931/Z/11/Z) and two BBSRC BBR awards (BB/L024233/1 and BB/M018423/1).

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