omeSOM statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Gene expression microarray data visualization Gene expression clustering chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

omeSOM specifications

Information


Unique identifier OMICS_25851
Name omeSOM
Alternative name transcript/metabol-ome Self Organizing Map
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Registration required Yes
Maintained Yes

Maintainer


  • person_outline Georgina Stegmayer <>

Additional information


http://sinc.unl.edu.ar/web-demo/omesom-full/

Information


Unique identifier OMICS_25851
Name omeSOM
Alternative name transcript/metabol-ome Self Organizing Map
Software type Application/Script
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Windows
Programming languages MATLAB
License Academic Free License (AFL)
Computer skills Medium
Version 2.27.17
Stability Stable
Requirements
SOM toolbox
Maintained Yes

Versioning


Add your version

Maintainer


  • person_outline Georgina Stegmayer <>

Additional information


http://sinc.unl.edu.ar/web-demo/omesom-full/

Publication for transcript/metabol-ome Self Organizing Map

omeSOM in publications

 (2)
PMCID: 4552031
PMID: 26313945
DOI: 10.1371/journal.pone.0136714

[…] average of a combination of reference genes, followed by anova analysis. the co-variation between the qrt-pcr genes and the transcriptome profile were calculated as euclidean distances by the *omesom software (version v2.27.17, available in http://sourcesinc.sourceforge.net/omesom/). for this analysis, data were normalized as previously described []. a 3 x 3 map was selected to group […]

PMCID: 3134339
PMID: 21527625
DOI: 10.1093/jxb/err055

[…] and ripening, by retrieving data from a previously published microarray experiment (). this analysis revealed that all 27 genes were expressed in tomato fruits in at least one time point. the *omesom model of neural clustering recently developed () revealed six groups. whilst these clusters grouped genes from all three evaluated pathways, no specific pathway patterns were identified (data […]


To access a full list of publications, you will need to upgrade to our premium service.

omeSOM institution(s)
Research Center for Signals, Systems and Computational Intelligence, FICHUNL, CONICET, Ciudad Universitaria UNL, Santa Fe, Argentina; Centro de Investigación en Ingeniería en Sistemas de Información, CONICET, Santa Fe, (3000), Argentina; Instituto de Biotecnología, Instituto Nacional de Tecnología Agrícola (IB-INTA), CONICET, Castelar, Argentina; Boyce Thompson Institute for Plant Research, Cornell University Campus, Ithaca, NY, USA
omeSOM funding source(s)
Supported by CONICET (PIP 1122008, PIP 1142009), ANPCyT (PICT 2008 00100, PICT 2009 00140, PAE 37122, PICT 2009 00152), INTA (PE 243542), a grant from the United States National Science Foundation (DBI-0923312) and in part by Korea Research Foundation Grant (KRF-2006-214-F00006).

omeSOM reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review omeSOM