OMiAT specifications

Information


Unique identifier OMICS_22901
Name OMiAT
Alternative name Optimal Microbiome-based Association Test
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 5.3
Stability Stable
Maintained Yes

Subtool


  • MiCAM

Download


download.png

Versioning


No version available

Documentation


Maintainers


  • person_outline Hyunwook Koh
  • person_outline Huilin Li

Additional information


https://sites.google.com/site/huilinli09/software

Publication for Optimal Microbiome-based Association Test

OMiAT citation

library_books

A highly adaptive microbiome based association test for survival traits

2018
BMC Genomics
PMCID: 5859547
PMID: 29558893
DOI: 10.1186/s12864-018-4599-8

[…] . OMiAT [] is a further adaptive test which approximates to an optimal test adaptively throughout the sum of powered score tests (SPU) [] and MiRKAT tests. By including SPU tests in the search space, OMiAT robustly discovers rare, mid-abundant, and abundant associated lineages along with the functionality of Optimal MiRKAT.There has also been increasing interest in discovering microbial taxa that […]

OMiAT institution(s)
Department of Population Health and Environmental Medicine, New York University School of Medicine, New York, NY, USA; Department of Medicine and Microbiology, New York University Langone Medical Center, New York, NY, USA
OMiAT funding source(s)
Supported, in part, by NIH grants, R01 DK090989, R01DK110014, and U01CA182370, the Diane Belfer Program in Human Microbial Ecology, and the C&D Fund.

OMiAT reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review OMiAT