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OMiCC specifications


Unique identifier OMICS_30376
Name OMiCC
Alternative name OMics Compendia Commons
Interface Web user interface, Application programming interface
Restrictions to use None
Computer skills Advanced
Version 1.0.20
Stability Stable
Maintained Yes


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus



  • person_outline John Tsang

Additional information

Publication for OMics Compendia Commons

OMiCC citations


Multi omics Comparative Analysis Reveals Multiple Layers of Host Signaling Pathway Regulation by the Gut Microbiota

PMCID: 5655592
PMID: 29085914
DOI: 10.1128/mSystems.00107-17
call_split See protocol

[…] r for Biotechnology Information ( (identifiers GSE1392, GSE5198, GSE8006, GSE18056, GSE23573, GSE32084, GSE32513, and GSE46952). The meta-analysis was performed using OMics Compendia Commons (OMiCC; (), a community-based online toolset for analyzing gene expression data. The results of the meta-analysis are available online (https://om […]


RefEx, a reference gene expression dataset as a web tool for the functional analysis of genes

Sci Data
PMCID: 5574374
PMID: 28850115
DOI: 10.1038/sdata.2017.105

[…] determine where and when their genes of interest are expressed or not expressed in various species. ReCount also contains analysis-ready RNA-Seq gene count datasets. In addition, a similar tool named OMics Compendia Commons (OMiCC), which is freely available and aims to assist biologists with limited bioinformatics training, was recently reported. OMiCC enables the broader biomedical research comm […]


Meta analysis of crowdsourced data compendia suggests pan disease transcriptional signatures of autoimmunity

PMCID: 5399965
PMID: 28491277
DOI: 10.5256/f1000research.11275.r19356

[…] 65.d146994 F1000Research: Dataset 2. R markdown script to generate the data analysis report, 10.5256/f1000research.10465.d146995 F1000Research: Dataset 3. Meta-analysis output files exported from OMiCC, 10.5256/f1000research.10465.d146996 F1000Research: Dataset 4. Results of Toppgene analyses against KEGG, Reactome, and Gene Ontology (GO) Biological Process terms using the DE genes listed in […]


Perception and Attitude towards Mental Illness in an Urban Community in South Delhi – A Community Based Study

PMCID: 3775047
PMID: 24049226
DOI: 10.4103/0253-7176.116244

[…] interview schedule was translated into Hindi language, pretested, and then modified before use. Attitude about mental illness was studied by using Opinion about Mental Illness for Chinese Community (OMICC) scale. English version of OMICC scale was translated into Hindi language. Hindi version was again back translated into English for checking integrity of concepts of various domains. Hindi versi […]


Psychiatric Curriculum and its Impact on the Attitude of Indian Undergraduate Medical Students and Interns

PMCID: 3122550
PMID: 21716779
DOI: 10.4103/0253-7176.78509

[…] ttitudes toward mentally ill patients. The questionnaire was constructed and validated by Burra. We used the modified version of the scale, the opinions about Mental Illness in the Chinese Community (OMICC) (Ng and Chan, 2000). The scale has six domains, namely, Separatism (S), Stereotyping (St), Restrictiveness (R), Benevolence (B), Pessimistic Prediction (P) and Stigmatization (Stig). The scores […]


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OMiCC institution(s)
Systems Genomics and Bioinformatics Unit, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA; Office of the Chief Laboratory of Systems Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA
OMiCC funding source(s)
Supported by the Intramural Program of the National Institute of Allergy and Infectious Diseases at the National Institutes of Health.

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