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|Interface||Graphical user interface|
|Restrictions to use||None|
|Operating system||Unix/Linux, Mac OS, Windows|
|License||GNU General Public License version 2.0|
methods, GenomicRanges, R(>=2.14.0)
No version available
- person_outline Chunhua Yan
Publication for OmicCircos
Integrative genomic and transcriptomic analysis of leiomyosarcoma
[…] RNA read. Fusion transcripts were determined using the TopHat2 post-alignment pipeline, and candidates with a score >300 were selected for further analysis. Circos plots were drawn with the R package OmicCircos. […]
High Density Single Nucleotide Polymorphism (SNP) Mapping and Quantitative Trait Loci (QTL) Analysis in a Biparental Spring Triticale Population Localized Major and Minor Effect Fusarium Head Blight Resistance and Associated Traits QTL
[…] p diagrams illustrating QTL positions were drawn using MapChart software (version 2.32) . A Circos diagram representing the epistatic interactions in a circular network plot was generated using the OmicCircos (version 1.14.0) package  in R version 3.2.3 . […]
Comparative genomic analysis of a new tellurite resistant Psychrobacter strain isolated from the Antarctic Peninsula
[…] 20 GenBank formatted file (NZ_LIQB00000000.1) using the plotMyGBK wrapper script (https://github.com/microgenomics/plotMyGBK); plotMyGBK uses BioPython and the R platform with the packages rSamTools, OmicCircos, and data.table to produce a vector image of a circular map (; ; ; ; https://github.com/Rdatatable/data.table). […]
Are Fusion Transcripts in Relapsed/Metastatic Head and Neck Cancer Patients Predictive of Response to Anti EGFR Therapies?
[…] eparated by 100.000 bp distance; (ii) spanning reads on both sides should have at least 13 bp; and (iii) reads map to multiple locations (>2). The annotated gene fusions were then displayed using the OmicCircos software package  with respect to genomic position using the hg19 reference. […]
Guanylate binding protein 1 is a potential new therapeutic target for triple negative breast cancer
[…] ands (HMM CG Islands)  were performed with FDb.InfiniumMethylation.hg19 . Shore, shelf and open sea extension of CG Islands was determined with GenomicRanges . Circos plot  was performed with OmicCircos . […]
TDP2 suppresses chromosomal translocations induced by DNA topoisomerase II during gene transcription
[…] CCT-3′). Novel-size bands were purified from agarose gel and sequenced using MLLBgl2_4 or MLLSac1_5 (5′-AGTGCAGTGGCGTGATAATG-3′) primers. Translocations were represented as by a Circos plot using the OmicCircos package of R. […]
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