OmicCircos statistics

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Citations per year

Number of citations per year for the bioinformatics software tool OmicCircos

Tool usage distribution map

This map represents all the scientific publications referring to OmicCircos per scientific context
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Associated diseases

This word cloud represents OmicCircos usage per disease context

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OmicCircos specifications


Unique identifier OMICS_04659
Name OmicCircos
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Medium
Version 1.19.0
Stability Beta
methods, GenomicRanges, R(>=2.14.0)
Maintained Yes




No version available



Publication for OmicCircos

OmicCircos citations


Integrative genomic and transcriptomic analysis of leiomyosarcoma

Nat Commun
PMCID: 5762758
PMID: 29321523
DOI: 10.1038/s41467-017-02602-0

[…] RNA read. Fusion transcripts were determined using the TopHat2 post-alignment pipeline, and candidates with a score >300 were selected for further analysis. Circos plots were drawn with the R package OmicCircos. […]


High Density Single Nucleotide Polymorphism (SNP) Mapping and Quantitative Trait Loci (QTL) Analysis in a Biparental Spring Triticale Population Localized Major and Minor Effect Fusarium Head Blight Resistance and Associated Traits QTL

PMCID: 5793172
PMID: 29304028
DOI: 10.3390/genes9010019

[…] p diagrams illustrating QTL positions were drawn using MapChart software (version 2.32) []. A Circos diagram representing the epistatic interactions in a circular network plot was generated using the OmicCircos (version 1.14.0) package [] in R version 3.2.3 []. […]


Comparative genomic analysis of a new tellurite resistant Psychrobacter strain isolated from the Antarctic Peninsula

PMCID: 5822837
PMID: 29479501
DOI: 10.7717/peerj.4402

[…] 20 GenBank formatted file (NZ_LIQB00000000.1) using the plotMyGBK wrapper script (; plotMyGBK uses BioPython and the R platform with the packages rSamTools, OmicCircos, and data.table to produce a vector image of a circular map (; ; ; ; […]


Are Fusion Transcripts in Relapsed/Metastatic Head and Neck Cancer Patients Predictive of Response to Anti EGFR Therapies?

PMCID: 5702394
PMID: 29259349
DOI: 10.1155/2017/6870614

[…] eparated by 100.000 bp distance; (ii) spanning reads on both sides should have at least 13 bp; and (iii) reads map to multiple locations (>2). The annotated gene fusions were then displayed using the OmicCircos software package [] with respect to genomic position using the hg19 reference. […]


Guanylate binding protein 1 is a potential new therapeutic target for triple negative breast cancer

BMC Cancer
PMCID: 5688804
PMID: 29115931
DOI: 10.1186/s12885-017-3726-2
call_split See protocol

[…] ands (HMM CG Islands) [] were performed with FDb.InfiniumMethylation.hg19 []. Shore, shelf and open sea extension of CG Islands was determined with GenomicRanges []. Circos plot [] was performed with OmicCircos []. […]


TDP2 suppresses chromosomal translocations induced by DNA topoisomerase II during gene transcription

Nat Commun
PMCID: 5550487
PMID: 28794467
DOI: 10.1038/s41467-017-00307-y
call_split See protocol

[…] CCT-3′). Novel-size bands were purified from agarose gel and sequenced using MLLBgl2_4 or MLLSac1_5 (5′-AGTGCAGTGGCGTGATAATG-3′) primers. Translocations were represented as by a Circos plot using the OmicCircos package of R. […]

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OmicCircos institution(s)
Center for Biomedical Informatics and Information Technology, National Cancer Institute, Chinakville, MD, USA

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