Omics Pipe statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.


Citations per year

Citations chart

Popular tool citations

chevron_left Bioinformatics workflows Libraries/frameworks chevron_right
Popular tools chart

Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

Omics Pipe specifications


Unique identifier OMICS_05402
Name Omics Pipe
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python, R
Parallelization MapReduce
License MIT License
Computer skills Advanced
Stability Stable
High performance computing Yes
Maintained Yes


Add your version


Publication for Omics Pipe

Omics Pipe in publication

PMCID: 5429012
PMID: 27013646
DOI: 10.1093/bib/bbw020

[…] several additional downstream steps and complex report generation (). figure 1, although bioinformatics-specific pipelines such as bcbio-nextgen ( and omics pipe [] offer high-performance automated analysis, they are not frameworks in the sense they are not easily extensible to integrate new user-defined tools. a bioinformatics framework […]

To access a full list of publications, you will need to upgrade to our premium service.

Omics Pipe institution(s)
Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA, USA

Omics Pipe reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Omics Pipe