Omics Pipe statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

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Omics Pipe specifications

Information


Unique identifier OMICS_05402
Name Omics Pipe
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python, R
Parallelization MapReduce
License MIT License
Computer skills Advanced
Stability Stable
High performance computing Yes
Maintained Yes

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Documentation


Publication for Omics Pipe

Omics Pipe in publication

PMCID: 5429012
PMID: 27013646
DOI: 10.1093/bib/bbw020

[…] several additional downstream steps and complex report generation (). figure 1, although bioinformatics-specific pipelines such as bcbio-nextgen (https://github.com/chapmanb/bcbio-nextgen) and omics pipe [] offer high-performance automated analysis, they are not frameworks in the sense they are not easily extensible to integrate new user-defined tools. a bioinformatics framework […]


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Omics Pipe institution(s)
Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA, USA

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