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Information


Unique identifier OMICS_07016
Name OMIGA
Alternative name Optimized Maker-based Insect Genome Annotation
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No

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Publication for Optimized Maker-based Insect Genome Annotation

OMIGA citations

 (22)
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Biochemical characterization of an enantioselective esterase from Brevundimonas sp. LY 2

2017
Microb Cell Fact
PMCID: 5477170
PMID: 28629408
DOI: 10.1186/s12934-017-0727-4
call_split See protocol

[…] Nucleotide and deduced amino acid sequence analyses were performed using Omiga Software 2.0. BlastN and BlastP were used for the nucleotide sequence and deduced amino acid identity searches (http://www.ncbi.nlm.nih.gov/Blast), respectively. The signal peptide of the amino […]

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Purification and properties of a novel quizalofop p ethyl hydrolyzing esterase involved in quizalofop p ethyl degradation by Pseudomonas sp. J 2

2017
Microb Cell Fact
PMCID: 5424357
PMID: 28490371
DOI: 10.1186/s12934-017-0695-8
call_split See protocol

[…] C analysis for their QPE degradative ability. The selected positive clones were sequenced by Shanghai Sangon Biotech Co., Ltd. Nucleotide and deduced amino acid sequence analyses were performed using OMIGA 2.0 software (Oxford Molecular Ltd.). Blastn and Blastp tools (www.ncbi.nlm.nih.gov/Blast) were used for nucleotide sequencing and deduced amino acid sequence identity searches, respectively. Ph […]

library_books

Characterization of the galactono 1,4 lactone dehydrogenase from pepper fruits and its modulation in the ascorbate biosynthesis. Role of nitric oxide☆

2017
Redox Biol
PMCID: 5328913
PMID: 28242561
DOI: 10.1016/j.redox.2017.02.009

[…] eotide and 0.4 mM primer (5’-GGTAACCAGTTTCATGCTTATGACTTGCTC-3’) designed as antisense gene.Amplified fragments were cloned into plasmid pGEM®-T Easy (Promega). Nucleotide sequences were analyzed with Omiga 2 (Oxford Molecular) and ABIview. The full-length cDNA for the GalLDH in Capsicum annuum L. were deposited in the databank with accession number AY547352 (https://www.ncbi.nlm.nih.gov). […]

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Lack of Association between the TSPAN18 Gene and Schizophrenia Based on New Data from Han Chinese and a Meta Analysis

2015
Int J Mol Sci
PMCID: 4490419
PMID: 26016498
DOI: 10.3390/ijms160611864
call_split See protocol

[…] s704671, exon10; rs73456450, exon10; rs836001, exon10; and rs836002, exon10) were selected for genotyping and analyses.Human genomic DNA was extracted according to the manufacturer’s recommendations (Omiga, Bio-tek, Norcross, GA, USA). All SNPs were genotyped with the SNPscan technique using SNPscan™ kit (Genesky Biotechnologies Inc., Shanghai, China) to design and determine the genotypes. This is […]

library_books

Genome Sequences of Three Helicobacter pylori Strains from Patients with Gastric Mucosa Associated Lymphoid Tissue Lymphoma

2015
Genome Announc
PMCID: 4408324
PMID: 25908123
DOI: 10.1128/genomeA.00229-15

[…] 454 Newbler (version 2.7; 454 Life Sciences, Branford, CT). All gaps between the contigs were filled by PCR and Sanger sequencing, and the complete genome sequences were assembled and analyzed using OMIGA 2.0 and the CG-Pipeline software (). The final draft genomes consisted of circular chromosomes of 1,629,815 bp, 1,562,125 bp, and 1,629,114 bp in length for HPML01, HPML02, and HPML03, respectiv […]

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Photosystem II Photochemistry and Phycobiliprotein of the Red Algae Kappaphycus alvarezii and Their Implications for Light Adaptation

2013
Biomed Res Int
PMCID: 3860078
PMID: 24380080
DOI: 10.1155/2013/256549
call_split See protocol

[…] ra paradoxa (M11159, CP), and Guillardia theta (AM183803) were searched at NCBI [, ]. PBP nucleotide sequences of K. alvarezii (KA) were cloned in this paper and translated to amino acid sequences by Omiga []. Protein sequences of the PBSs previously described were used as database queries. Each protein in this query dataset was used to search for potential novel sequences in above sequenced cyano […]

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OMIGA institution(s)
Department of Entomology, College of Plant Protection, Nanjing Agricultural University, Nanjing, China

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