omiRas protocols

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description
omiRas computational protocol

omiRas specifications

Information


Unique identifier OMICS_00383
Name omiRas
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Björn Rotter <>

Publication for omiRas

omiRas IN pipelines

 (2)
2014
PMCID: 4054612
PMID: 24977165
DOI: 10.1155/2014/948408

[…] additionally trimmed from each end of the reads (-q 20). only reads with a minimum length of 15 bps after clipping were used for further analysis (-m 15)., preprocessed fastq-files were submitted to omiras. briefly, in omiras, reads are summarized to unitags. singletons are removed from the data set and the remaining tags are mapped to the human genome (hg19) with bowtie [18] allowing […]

2014
PMCID: 4054612
PMID: 24977165
DOI: 10.1155/2014/948408

[…] from each end of the reads (-q 20). only reads with a minimum length of 15 bps after clipping were used for further analysis (-m 15)., preprocessed fastq-files were submitted to omiras. briefly, in omiras, reads are summarized to unitags. singletons are removed from the data set and the remaining tags are mapped to the human genome (hg19) with bowtie [18] allowing at most two mismatches […]

omiRas institution(s)
Plant Molecular Biology, Institute of Molecular BioSciences, University of Frankfurt am Main, Frankfurt am Main, Germany; GenXPro GmbH, Frankfurt Innovation Center Biotechnology, Frankfurt am Main, Germany; Molecular Bioinformatics Group, Institute of Computer Science, Faculty of Computer Science and Mathematics, Cluster of Excellence, Frankfurt “Macromolecular Complexes”, Frankfurt am Main, Germany
omiRas funding source(s)
Supported by the Bundesministerium für Bildung und Forschung (BMBF) [grant number FKZ 0316043].

omiRas reviews

 (2)
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Anonymous user #157

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Web
Best tool in town!
Anonymous user #156's avatar image No country

Anonymous user #156

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Web
Good features & nice user interface