omiRas protocols
omiRas specifications
Information
| Unique identifier | OMICS_00383 |
|---|---|
| Name | omiRas |
| Interface | Web user interface |
| Restrictions to use | None |
| Computer skills | Basic |
| Stability | Stable |
| Maintained | Yes |
Maintainer
- person_outline Björn Rotter <>
Publication for omiRas
OmiRas: a Web server for differential expression analysis of miRNAs derived from small RNA-Seq data.
omiRas IN pipelines
(2)[…] additionally trimmed from each end of the reads (-q 20). only reads with a minimum length of 15 bps after clipping were used for further analysis (-m 15)., preprocessed fastq-files were submitted to omiras. briefly, in omiras, reads are summarized to unitags. singletons are removed from the data set and the remaining tags are mapped to the human genome (hg19) with bowtie [18] allowing […]
[…] from each end of the reads (-q 20). only reads with a minimum length of 15 bps after clipping were used for further analysis (-m 15)., preprocessed fastq-files were submitted to omiras. briefly, in omiras, reads are summarized to unitags. singletons are removed from the data set and the remaining tags are mapped to the human genome (hg19) with bowtie [18] allowing at most two mismatches […]
omiRas reviews
(2)
