Protocols

Omix specifications

Information


Unique identifier OMICS_06431
Name Omix
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Publication for Omix

Omix citations

 (2)
call_split

A comprehensive evaluation of constraining amino acid biosynthesis in compartmented models for metabolic flux analysis

2017
Metab Eng Com
PMCID: 5699530
PMID: 29188182
DOI: 10.1016/j.meteno.2017.07.001
call_split See protocol

[…] tems, Santa Clara, CA, USA) was used to convert the model in text file format into the respective MATLAB files. The resulting flux distributions were visualized on metabolic pathway maps created with Omix® (). […]

library_books

13C Flux Spectral Analysis of Host Pathogen Metabolism Reveals a Mixed Diet for Intracellular Mycobacterium tuberculosis

2013
PMCID: 3752972
PMID: 23911587
DOI: 10.1016/j.chembiol.2013.06.012

[…] Statistical analysis was performed using the Statistics Toolbox in Matlab 2001b (The Mathworks), and flux maps were visualized using Omix (v. 1.5.8, http://www.13cflux.net/omix). Best flux estimates were calculated by minimizing the sum of squares (residual values) of the offsets between the measured and simulated labeling patterns […]

Omix institution(s)
Institute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum Jülich GmbH, Jülich, Germany

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