Protocols

Omixon Target HLA Typing specifications

Information


Unique identifier OMICS_02142
Name Omixon Target HLA Typing
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use License purchase required
Operating system Unix/Linux
License Commercial
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Omixon Target HLA Typing Team

Omixon Target HLA Typing citations

 (2)
library_books

The impact of next generation sequencing technologies on HLA research

2015
J Hum Genet
PMCID: 4660052
PMID: 26311539
DOI: 10.1038/jhg.2015.102

[…] or HLA typing from various types of data, including WGS, WES, RNA sequencing and amplicon datasets., , , , , , , , An example of HLA-typing software for WGS or WES, including a brief overview of the Omixon Target HLA typing system, is described in . For statistical methods, sequence reads are first aligned to the whole IMGT/HLA database (all known HLA alleles). Then, the best matching alleles are […]

call_split

A Bead based Normalization for Uniform Sequencing depth (BeNUS) protocol for multi samples sequencing exemplified by HLA B

2014
BMC Genomics
PMCID: 4133082
PMID: 25087472
DOI: 10.1186/1471-2164-15-645
call_split See protocol

[…] BLAT [] search to known HLA allele sequences in the database as complete matches of genomic sequence or CDS sequence. For validation, HLA-B genotype calls were compared with the result of PCR-SSO and Omixon Target HLA Typing (Omixon Inc., Budapest, Hungary) [, ]. […]

Omixon Target HLA Typing institution(s)
Omixon Biocomputing Ltd., Budapest, Hungary

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