Omixon Target HLA Typing specifications

Information


Unique identifier OMICS_02142
Name Omixon Target HLA Typing
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use License purchase required
Operating system Unix/Linux
License Commercial
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Omixon Target HLA Typing Team <>

Omixon Target HLA Typing in publications

 (2)
PMCID: 4660052
PMID: 26311539
DOI: 10.1038/jhg.2015.102

[…] hla typing from various types of data, including wgs, wes, rna sequencing and amplicon datasets., , , , , , , , an example of hla-typing software for wgs or wes, including a brief overview of the omixon target hla typing system, is described in . for statistical methods, sequence reads are first aligned to the whole imgt/hla database (all known hla alleles). then, the best matching alleles […]

PMCID: 4133082
PMID: 25087472
DOI: 10.1186/1471-2164-15-645

[…] [] search to known hla allele sequences in the database as complete matches of genomic sequence or cds sequence. for validation, hla-b genotype calls were compared with the result of pcr-sso and omixon target hla typing (omixon inc., budapest, hungary) [, ]., the data set associated with this project has been submitted to ddbj sequence reads archive (dra accession number: dra001289)., […]


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