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omniSpect specifications

Information


Unique identifier OMICS_05664
Name omniSpect
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages MATLAB
Computer skills Advanced
Stability No
Maintained No

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Unique identifier OMICS_05664
Name omniSpect
Interface Web user interface
Restrictions to use None
Programming languages MATLAB
Computer skills Basic
Stability No
Maintained No

Publication for omniSpect

omniSpect in publications

 (3)
PMCID: 5062153
PMID: 27734938
DOI: 10.1038/srep35374

[…] intensity-dependent noise. image files generated by the hdi software (waters) from a heterogeneous tumor containing necrotic and viable centers were subjected to 4 component nmf analysis using omnispect (http://cs.appstate.edu/omnispect/). images of spectrally correlated areas along with characteristic mass spectra thereof were generated using this platform and incorporated […]

PMCID: 4861325
PMID: 27159635
DOI: 10.1371/journal.pone.0154837

[…] study of the dicer-pten dko mice with a desi msi study of the complete reproductive system of the same mouse model.[] desi msi multivariate data analysis was carried out with a new version of omnispect[], now capable of handling larger (~tb) msi datasets. by separating the msi data into multiple nmf components via omnispect, features representing metabolomic changes between healthy […]

PMCID: 4357645
PMID: 25542566
DOI: 10.1007/s00216-014-8357-8

[…] private datasets is provided in the electronic supplementary material., the imzml data can be downloaded and viewed in freely available software tools such as msireader [], datacube explorer [], and omnispect []. alternative commercial tools include quantinetix [] and maldivision []. an updated list of available tools is available at http://www.imzml.org., panel c in fig.  shows the imzml […]


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omniSpect institution(s)
The Wallace H Coulter Department of Biomedical Engineering, Emory University, Atlanta, GA, USA

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