omnomicsQ specifications


Unique identifier OMICS_10890
Name omnomicsQ
Software type Framework/Library
Interface Command line interface
Restrictions to use License purchase required
Input data OmnomicsQ calculates quality metrics for raw sequence (gzipped .fastq), for aligned reads (.bam), and for called variants (.vcf).
Output data QC metrics, benchmarks, etc.
Biological technology Illumina, Life Technologies, Pacific Biosciences, Roche, Oxford Nanopore
Operating system Unix/Linux, Windows
Programming languages Cython, Java, Javascript, PHP, R
Parallelization MapReduce
License Commercial
Computer skills Advanced
Stability Stable
High performance computing Yes
Maintained Yes


No version available


  • person_outline Euformatics
omnomicsQ institution(s)
Euformatics Oy, Espoo, Finland

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