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Beta-barrel outer membrane protein (OMP) databases | Protein structure data analysis

Integral membrane proteins account for ∼20–30% of fully sequenced proteomes (Krogh et al., 2001). To date, two major structural architectures can be distinguished: the α-helical and the β-barrel membrane proteins. The former are…
OMPdb
Dataset

OMPdb

A database of ß-barrel outer membrane proteins from Gram-negative bacteria.…

A database of ß-barrel outer membrane proteins from Gram-negative bacteria. Information included in OMPdb consists of sequence data, as well as annotation for structural characteristics (such as the…

HHomp
Web

HHomp

A sensitive protein homology detection and classification method of outer…

A sensitive protein homology detection and classification method of outer membrane proteins (OMP). It uses HMM-HMM-comparison and an integrated beta-barrel prediction method. The output is a list of…

SSEA_SVM
Web

SSEA_SVM

A predictor for outer membrane proteins (OMPs). In comparison with existing…

A predictor for outer membrane proteins (OMPs). In comparison with existing methods in the literature, SSEA_SVM is also highly competitive. SSEA_SVM is a promising method to identify OMPs in genomic…

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