Oncodrive-fm statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Driver mutation prioritization chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

Oncodrive-fm specifications

Information


Unique identifier OMICS_00157
Name Oncodrive-fm
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Requirements
the Statistics::Descriptive, R
Maintained Yes

Versioning


Add your version

Documentation


Maintainer


  • person_outline Abel González-Pérez <>

Publication for Oncodrive-fm

Oncodrive-fm in publications

 (16)
PMCID: 5908809
PMID: 29674644
DOI: 10.1038/s41467-018-03987-2

[…] of mutation signature 3 (supplementary fig. ). out of the identified genes with likely functional relevance, ddx3x, bcor, and stat3 were identified in ankl as recurrent by both the mutsigcv and oncodrive-fm algorithms (fig. , supplementary data ). moreover, these genes were abundantly expressed in nk cells, further supporting their role in ankl pathogenesis (fig. , supplementary data )., […]

PMCID: 5777097
PMID: 29434842
DOI: 10.3892/ol.2017.7521

[…] development of computational tools that are able to detect moderate or low-frequency mutated driver genes is necessary to provide a more complete understanding of cancer genomics. methods including oncodrive-fm () aim to identify genes with a bias toward the enrichment of variants with a high fi, as measured by the sorting intolerant from tolerant algorithm (), polyphen2 () and mutation […]

PMCID: 5786023
PMID: 29023197
DOI: 10.1080/15476286.2017.1391436

[…] above, we distinguish these two groups of genes – gems and driver genes, based on whether the mutations comprise of any mutation or only nonsynonymous ones respectively. to this end, we used oncodrive fm an approach to detect genes that tend to accumulate functional somatic mutations across a cohort of cancer samples. a significant trend towards the accumulation of such functional […]

PMCID: 5640938
PMID: 29046615
DOI: 10.1186/s12935-017-0458-y

[…] low or middle mutation frequencies and were first determined as driver genes in glioma, such as bcor, frg1b, gabra6 and lrp1b. in addition, multiple idh1-dependent driver genes were also detected by oncodrive-fm and drgap, for instance notch1 and arid1a, suggesting these drivers might be therapeutic targets for idh1-mutated gliomas., in addition, we also uncovered 428 differentially expressed […]

PMCID: 5564847
PMID: 28477017
DOI: 10.18632/oncotarget.17225

[…] are working in a distinctive way and it yields various outputs. for example, algorithms such as active driver focus on phosphorylation and kinase domain site. similarly dendrix, mdp finder, oncodrive-fm and mutsigcv predict based on mutational specificity, high impact mutational accumulation and patient-specific mutations respectively. hence, driver db associated tools provide […]


To access a full list of publications, you will need to upgrade to our premium service.

Oncodrive-fm institution(s)
Research Programme on Biomedical Informatics, Universitat Pompeu Fabra, Parc de Recerca Biomèdica de Barcelona,Barcelona, Spain; Institució Catalana de Recerca i Estudis Avançats, Barcelona, Spain
Oncodrive-fm funding source(s)
This work was supported by the Spanish Ministry of Science and Technology [SAF2009-06954] and the Spanish National Institute of Bioinformatics.

Oncodrive-fm reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Oncodrive-fm