Oncofuse specifications

Information


Unique identifier OMICS_01406
Name Oncofuse
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A list of genomic positions of breakpoints in a pair of fusion partner genes.
Input format TSV
Output format TSV
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Version 1.1.1
Stability Stable
Requirements JRE
Maintained Yes

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Documentation


Maintainer


  • person_outline Francisco J. Novo <>

Information


Unique identifier OMICS_01406
Name Oncofuse
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Francisco J. Novo <>

Oncofuse articles

Oncofuse citation

2017
PMCID: 5610242

[…] counts of genes and exons, and cufflinks was used to estimate gene expression (fpkm). genetic variants were called using gatk unified genotyper. fusions were detected using star and filtered using oncofuse. quality of raw and aligned reads was assessed using fastqc and qualimap., fpkm values of six technical samples (pcdna3-hey + dmso, rab25-hey + dmso, rab25-hey + rfp14, each from individual […]

Oncofuse institution(s)
Department of Genetics, University of Navarra, Pamplona, Spain
Oncofuse funding source(s)
Supported by the Spanish Ministry of Science and Innovation (SAF 2007-62473), the PIUNA Program of the University of Navarra, the Caja Navarra Foundation through the Program ‘You choose, you decide’ (Project 10.830) and ISCIII-RTICC (RD06/0020/0078).

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