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OncomiRDB specifications


Unique identifier OMICS_03751
Name OncomiRDB
Alternative name oncomiRNA DataBase
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained No


  • Primates
    • Homo sapiens


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Publication for oncomiRNA DataBase

OncomiRDB citations


Computational prediction of human disease related microRNAs by path based random walk

PMCID: 5601672
PMID: 28938576
DOI: 10.18632/oncotarget.17226

[…] miRNA deregulation in various human diseases. MiRbase [] is a comprehensive miRNA database that contains the sequences of precursor miRNAs, mature miRNAs, miRNA hairpin structure, and miRNA targets. OncomiRDB is a manually curated miRNA-cancer association database that contains more than 300 miRNAs and 2259 miRNA-cancer associations []. dbDEMC [] is an integrated database that is designed to stor […]


Identifying miRNA sponge modules using biclustering and regulatory scores

BMC Bioinformatics
PMCID: 5374547
PMID: 28361682
DOI: 10.1186/s12859-017-1467-5

[…] s are collected from COSMIC v77 [], GAD [], OMIM [], BCGD [] and G2SBC []. The list of 428 breast cancer miRNAs are obtained by integrating five databases: HMDD v2.0 [], miR2Disease [], miRCancer [], oncomiRDB [] and phenomiR v2.0 [].The experimentally validated miRNA-target interactions with strong evidence are from miRTarbase v6.1 []. The experimentally validated miRNA sponge interactions are re […]


The Potential of MicroRNAs in Personalized Medicine against Cancers

Biomed Res Int
PMCID: 4163464
PMID: 25243170
DOI: 10.1155/2014/642916

[…] eins (HDL and Argonaute 2) [–].Similar to mutations, several miRNA profiles in various human specimens and cancers have been collected and made publicly available in dedicated databases: PhenomiR [], oncomiRDB [], PROGmiR [], miRò [], and miRandola []. We acknowledge that revisiting these data can dampen enthusiasm for the diagnostic/prognostic potential of miRNAs [, ]. In fact, no matter the tech […]


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OncomiRDB institution(s)
MOE Key Laboratory of Bioinformatics, TNLIST Bioinformatics Division / Center for Synthetic and Systems Biology, Department of Automation, Tsinghua University, Beijing, China
OncomiRDB funding source(s)
Supported by National Basic Research Program of China [2012CB316503], National Natural Science Foundation of China [61005040, 61370035, 61105003] and Tsinghua National Laboratory for Information Science and Technology Cross-discipline Foundation.

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