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Oncotator

A tool for annotating genomic point mutations and short nucleotide insertions/deletions (indels) with variant- and gene-centric information relevant to cancer researchers. This information is drawn from 14 different publicly available resources that have been pooled and indexed. Annotations linked to variants range from basic information, such as gene names and functional classification (e.g. missense), to cancer-specific data from resources such as the Catalogue of Somatic Mutations in Cancer (COSMIC), the Cancer Gene Census, and The Cancer Genome Atlas (TCGA).

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Oncotator forum

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Oncotator classification

  • Animals
    • Homo sapiens

Oncotator specifications

Software type:
Package/Module
Restrictions to use:
Academic or non-commercial use
Programming languages:
Python
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes

Oncotator distribution

versioning

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No review has been posted.

Oncotator forum

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No open topic.

Oncotator classification

  • Animals
    • Homo sapiens

Oncotator specifications

Interface:
Web user interface
Programming languages:
Python
Stability:
Stable
Restrictions to use:
Academic or non-commercial use
Computer skills:
Basic
Maintained:
Yes

Oncotator support

Maintainer

  • Gad Getz <>
  • Gad Getz <>

Credits

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Publications

Institution(s)

Cancer Program, Broad Institute, Cambridge, MA, USA; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA; Department of Pathology, Harvard Medical School, Boston, MA, USA; Cancer Center and Department of Pathology, Massachusetts General Hospital, Boston, MA, USA

Link to literature

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