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  3. Genome annotation
  4. Repetitive DNA
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A tool for annotating genomic point mutations and short nucleotide insertions/deletions (indels) with variant- and gene-centric information relevant to cancer researchers. This information is drawn from 14 different publicly available resources that have been pooled and indexed. Annotations linked to variants range from basic information, such as gene names and functional classification (e.g. missense), to cancer-specific data from resources such as the Catalogue of Somatic Mutations in Cancer (COSMIC), the Cancer Gene Census, and The Cancer Genome Atlas (TCGA).

Software type:
Package
Interface:
Command line interface
Restrictions to use:
Academic users only
Operating system:
Unix/Linux
Programming languages:
Python
Computer skills:
Advanced
Stability:
Stable
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Interface:
Web user interface
Restrictions to use:
Academic users only
Programming languages:
Python
Computer skills:
Basic
Stability:
Stable
View all reviews

0 user review

No review has been posted.

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0 issue

No open issue.

Maintainer

  • Gad Getz <gadgetz at broadinstitute.org>

Institution(s)

Cancer Program, Broad Institute, Cambridge, MA 02142, USA; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA; Department of Pathology, Harvard Medical School, Boston, MA 02115, USA; Cancer Center and Department of Pathology, Massachusetts General Hospital, Boston, MA 02114, USA

  • (Ramos et al., 2015) Oncotator: cancer variant annotation tool. Human mutation.
    PMID: 25703262
  • Animals
    • Homo sapiens

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