ONCOTOPIX statistics

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Citations per year

Citations chart

Popular tool citations

chevron_left Image segmentation Data management and annotation Data analysis Morphometric analysis Cell counting Data analysis Data analysis Image enhancement 2D image reconstruction Image visualization chevron_right
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Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

ONCOTOPIX specifications


Unique identifier OMICS_27902
Software type Pipeline/Workflow
Interface Graphical user interface
Restrictions to use License purchase required
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Maintained Yes


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  • person_outline Visiopharm Team <>

Additional information


ONCOTOPIX in publications

PMCID: 5665647
PMID: 28975893
DOI: 10.7554/eLife.28366.045

[…] analysis. hazard ratios and 95% ci were used to determine the effect size for the outcome overall survival., nuclear esrp1 expression in intestinal epithelial cells (iecs) was quantified using oncotopix discovery (rrid:scr_015690; visiopharm, hoersholm, denmark) and applying a custom-made algorithm developed by the authors. in brief, inflammation grade was assessed for each biopsy […]

PMCID: 5047958
PMID: 27312066
DOI: 10.1038/modpathol.2016.112

[…] intensity scores, including aqua (historx/genoptix), tissue studio (definiens), inform (caliper/perkin-elmer), multiomyx (clarient), strataquest/tissuequest (tissuegnostics), and biotopix/oncotopix (visopharm)., , , immunofluorescence-based imaging of protein expression in formalin-fixed, paraffin-embedded tissue sections represents a superior alternative to chromogen-based in situ […]

PMCID: 5447782
PMID: 27801737
DOI: 10.1097/PAI.0000000000000463

[…] cores per case. two immunoassays, pathway and herceptest, and fluorescent in situ hybridization analysis were performed. the visiopharm her2-connect analysis protocol package was applied through the oncotopix digital image analysis software platform. her2 membrane connectivity, calculated by the analysis protocol package, was converted to standard ihc scores applying predetermined cutoff values […]

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