Oncotree statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Tumor progression chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

Oncotree specifications

Information


Unique identifier OMICS_09055
Name Oncotree
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 0.3.3
Stability Stable
Requirements
R(≥2.10), lattice, boot
Maintained Yes

Versioning


Add your version

Documentation


Maintainer


  • person_outline Aniko Szabo <>

Publication for Oncotree

Oncotree in publications

 (8)
PMCID: 5643378
PMID: 29038591
DOI: 10.1038/s41598-017-13650-3

[…] onco-types. most onco-types were classified into 15 categories (detailed information regarding sample, onco-type, and primary and metastatic tissue number are shown in fig.  and table ) according to oncotree (http://oncotree.mskcc.org/oncotree/), as non-small cell lung cancer (nsclc), breast cancer (idc), colorectal cancer (crc), prostate cancer (prad), bladder cancer (blca), glioma, ovarian […]

PMCID: 5095986
PMID: 27814769
DOI: 10.1186/s13073-016-0367-z

[…] for describing cancers []. several cancer-focused ontologies are available, such as national cancer institute (nci) thesaurus [], a set of encoded terms to describe cancers and tissue pathology, and oncotree, a set of 519 tumor types in 32 tissues []. oncotree includes the nci thesaurus code for each cancer type. through the nci term browser, the nci thesaurus codes can also be related […]

PMCID: 4848409
PMID: 27190992
DOI: 10.1155/2016/5237827

[…] flexible since they can represent multiple pathways at the same time []. various bioinformatics software programs have been proposed for the construction of oncogenetic tree including trap [] and oncotree []., in this paper, we construct two oncogenetic trees based on independent models based for human breast carcinoma. in the distance-based oncogenetic tree construction, the state […]

PMCID: 4593564
PMID: 26437257
DOI: 10.1371/journal.pone.0139753

[…] mutation-positive and negative families, providing, for the first time, an initial genetic and clinical description of families suspected of having ls within a cohort in brazil., the study used the oncotree database of the hereditary colorectal cancer registry of the pelvic surgery department of ac camargo cancer center (são paulo, brazil). the analyzed families were selected according […]

PMCID: 4191986
PMID: 25299648
DOI: 10.1371/journal.pone.0108358

[…] is the asymmetric temporal priority measured by rate of occurrence. this implicit form of timing assumes that, if occurs more often than , then it likely occurs earlier, thus satisfying , an oncotree is the rooted tree whose total weight (i.e., sum of all the weights of the edges) is maximized, and can be reconstructed in steps using edmond's algorithm . by construction, the resulting […]


To access a full list of publications, you will need to upgrade to our premium service.

Oncotree institution(s)
Department of Oncological Sciences, Huntsman Cancer Institute, University of Utah, Salt Lake City, UT, USA

Oncotree reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Oncotree