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Ondex

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Allows to link, integrate and visualize through graph analysis techniques data from diverse biological data sets. ONDEX combines large-scale database integration, sequence analysis, text mining, graph analysis and allows users to visualize the data. The software can handle very large graphs and represent many hundreds of thousands of data items. It can be used for analysis and interpretation of experimental results.

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Ondex forum

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Ondex classification

Ondex specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Java
Computer skills:
Medium
Maintained:
Yes
Interface:
Graphical user interface
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Stability:
Beta
Wikipedia:
https://sourceforge.net/p/ondex/wiki/Home/

Ondex distribution

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Ondex forum

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No open topic.

Ondex classification

Ondex specifications

Interface:
Web user interface
Computer skills:
Basic
Restrictions to use:
None

Ondex support

Documentation

Maintainers

  • Jacob Kohler <>
  • ONDEX team <>
This tool is not maintained anymore.

Credits

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Publications

Institution(s)

Division of Biomathematics and Bioinformatics, Rothamsted Research, Harpenden, UK; Faculty of Technology, Bielefeld University, Germany; University of Koblenz, Germany

Funding source(s)

Supported by NRW International Graduate School in Bioinformatics and Genome Research’ at the Bielefeld University, the European Science Foundation, BBSRC grant BBS/B/13640 and the Biotechnology and Biological Sciences Research Council.

Link to literature

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.