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Facilitates analysis of microarrays and miRNA/RNA-seq data on laptops. oneChannelGUI can be used for quality control, normalization, filtering, statistical validation and data mining for single channel microarrays. It offers a comprehensive microarray analysis for Affymetrix 3′ (IVT) expression arrays as well as for the new generation of whole transcript arrays: human/mouse/rat exon 1.0 ST and human gene 1.0 ST arrays. oneChannelGUI inherits the core affylmGUI functionalities and permits a wider range of analysis allowing biologists to choose among different criteria and algorithms in order to analyze their data. It is a didactical tool since it could be used to introduce young life scientists to the use and interpretation of microarray data. For this purpose various data sets and exercises are available at the oneChannelGUI web site.

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oneChannelGUI forum

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oneChannelGUI classification

oneChannelGUI specifications

Unique identifier:
OMICS_02004
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
Artistic License version 2.0
Stability:
Stable
Software type:
Pipeline/Workflow
Restrictions to use:
None
Programming languages:
R
Computer skills:
Advanced
Maintained:
Yes

oneChannelGUI distribution

versioning

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No versioning.

oneChannelGUI support

Documentation

Credits

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Publications

Institution(s)

CBM (Cluster in Biomedicine) Scrl; AREA Science Park, Basovizza, Trieste, Italy

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