OnEX pipeline

OnEX specifications

Information


Unique identifier OMICS_02273
Name OnEX
Alternative name Ontology Evolution Explorer
Interface Web user interface
Restrictions to use None
Programming languages Java
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Hartung M. <>

Publication for Ontology Evolution Explorer

OnEX IN pipelines

 (4)
2011
PMCID: 3198872
PMID: 21914205
DOI: 10.1186/2041-1480-2-6

[…] oboedit [55] and obo explorer [56] to edit ontologies. by contrast, we focus on the management of (existing) ontology versions, difference computation as well as ontology evolution analyses., like onex [17], studies [57] and [58] aim at analyzing the evolution of biomedical ontologies. the presented method in [57] provides a colored graph visualization to help users recognizing added, deleted […]

2011
PMCID: 3198872
PMID: 21914205
DOI: 10.1186/2041-1480-2-6

[…] the presented method in [57] provides a colored graph visualization to help users recognizing added, deleted and changed concepts and relationships between two gene ontology versions. by contrast, onex provides tables and plots to quantitatively illustrate occurred ontology changes. it also allows interactive browsing of the ontology graph structure instead of showing a rather static graph […]

2011
PMCID: 3198872
PMID: 21914205
DOI: 10.1186/2041-1480-2-6

[…] and only considers concept and relationship frequencies as well as the maximal and the average path length in an ontology. both [57] and [58] show results for the gene ontology only whereas [41] and onex are broader evolution studies including more than 750 versions of 16 life science ontologies., in several of our previous work we focused on analyzing the evolution of life science ontologies […]

2011
PMCID: 3198872
PMID: 21914205
DOI: 10.1186/2041-1480-2-6

[…] as described in [20] gomma is able to manage various versions of mappings between two ontologies. that makes it possible to study the stability of mappings in detail. this feature is not provided by onex which focuses on exploring changes purely on the ontological level. furthermore, with the help of the match component one can use/combine the different match approaches (e.g., parallel matching […]

OnEX institution(s)
Interdisciplinary Centre for Bioinformatics, University of Leipzig, Leipzig, Germany; Institute for Medical Informatics, Statistics and Epidemiology, University of Leipzig, Leipzig, Germany; Department of Computer Science, University of Leipzig, Leipzig, Germany

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