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OneZoom specifications

Information


Unique identifier OMICS_08826
Name OneZoom
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Input format Newick, non standard (binary trees only)
Operating system Unix/Linux
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes

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Information


Unique identifier OMICS_08826
Name OneZoom
Interface Web user interface
Restrictions to use None
Input format Newick, non standard (binary trees only)
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline OneZoom <>

Publication for OneZoom

OneZoom in publications

 (5)
PMCID: 5501477
PMID: 28683774
DOI: 10.1186/s12862-017-0958-3

[…] resources, including ncbi (www.ncbi.nlm.nih.gov/taxonomy), the paleobiology database (www.paleobiodb.org), fishbase (www.fishbase.org), catalogue of life (www.catalogueoflife.org []), and onezoom (www.onezoom.org). the new version presented here incorporates phylogenetic results from recent studies and fixes involuntary errors and omissions. we also highlight and comment all cases […]

PMCID: 5389409
PMID: 28413610
DOI: 10.5256/f1000research.11550.r19939

[…] users to collapse nodes at will. these programs were major advances in helping phylogeneticists conceptualise their own phylogenetic hypotheses., at least as transformative was the release of onezoom : a fractal phylogeny representation capable (theoretically) of displaying the entire tree of life on one page. onezoom also requires the user to explore the tree, scanning […]

PMCID: 5513223
PMID: 28725368
DOI: 10.1002/ece3.2365

[…] 32 plants listed in table  according to a reference timetree of 639 taxa of seed plants (zanne et al. ) as well as an online timescaled molecular phylogeny for 32,223 land plant species (http://www.onezoom.org/vascularplants_tank2013nature.htm). the dated phylogeny and associated defense traits, according to table , were imported to the software mesquite (maddison and maddison ) for ancestral […]

PMCID: 4620499
PMID: 26498226
DOI: 10.1038/srep15457

[…] of radiations in the groups considered here is not yet certain. conflicting values to this effect can be found as regards, e.g., mammal radiation. the bulk of their diversification was presented in onezoom as pre-dating the end-cretaceous extinction, which made us include mammals as one of our study groups. conversely, the monocotyledon order poales (which includes grasses, sedges and rushes), […]

PMCID: 3644299
PMID: 23653398
DOI: 10.1371/currents.tol.53ba26640df0ccaee75bb165c8c26288

[…] phylogeny with bootstrap values and taxonomic annotations is depicted in fig. s1 as a cladogram and can also be visualized online as a time-tree using a fractal explorer and zooming interface at onezoom (also posted at deepfin)., the basal nodes of the tree and relationships among early branching groups of bony fishes have been well established and thoroughly discussed by recent molecular […]


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OneZoom institution(s)
Division of Biology, Imperial College London, Silwood Park Campus, Ascot, Berkshire, UK; Department of Biological Sciences and Institute for Bioinformatics and Evolutionary Studies (IBEST), University of Idaho, Moscow, ID, USA

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