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Online Help specifications

Information


Unique identifier OMICS_33993
Name Online Help
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Online Help citations

 (30)
library_books

miR 25 3p, Positively Regulated by Transcription Factor AP 2α, Regulates the Metabolism of C2C12 Cells by Targeting Akt1

2018
Int J Mol Sci
PMCID: 5877634
PMID: 29518009
DOI: 10.3390/ijms19030773

[…] e ligated into the KpnI/HindIII sites of the pGL3-Basic vector (Promega). AliBaba2.1 (Available online: http://www.gene-regulation.com/) [] and MatInspector (Available online: http://www.genomatix.de/online_help/help_matinspector/matinspector_help.html) [] were used to predict the potential transcription factor binding sites. The AP-2α transcription factor binding sites of the miR-25-3p promoter r […]

library_books

On monospecific genera in prokaryotic taxonomy

2017
PMCID: 5655349
PMID: 29318203
DOI: 10.1016/j.synbio.2017.08.004

[…] s the algorithm behind the CVTree method and the features of the Web Server have been described repeatedly in literature over the years, we refer the readers to the published papers , , , and to the online help file that comes with the CVTree3 Web Server .The latest release of LVTree (as of February 2017) is built on 475 Archaea and 12,478 Bacteria 16S rRNA sequences . In order to compare the bra […]

call_split

Molecular and functional characterization of the BMPR2 gene in Pulmonary Arterial Hypertension

2017
Sci Rep
PMCID: 5432510
PMID: 28507310
DOI: 10.1038/s41598-017-02074-8
call_split See protocol

[…] (http://www.umd.be/HSF). Finally, alterations in binding sites of transcription factors in 5′UTR region of BMPR2 gene were evaluated with MatInspector software (available at https://www.genomatix.de/online_help/help_matinspector/matinspector_help.html). […]

library_books

STITCHER 2.0: primer design for overlapping PCR applications

2017
Sci Rep
PMCID: 5371788
PMID: 28358011
DOI: 10.1038/srep45349

[…] se primers and a list of compatible primer pairs are returned, but additional outputs can be selected. Users can learn more about each parameter by clicking on the user-guide download link within the Online Help tab of the Features section. Users can also email queries or suggestions to the address contained within the Contact section or enter their email address to receive notifications of update […]

library_books

Increased expression of EHF via gene amplification contributes to the activation of HER family signaling and associates with poor survival in gastric cancer

2016
PMCID: 5134001
PMID: 27787520
DOI: 10.1038/cddis.2016.346

[…] ncer. In addition, we found the core GGAA/T motif (EBS) in the promoters of EGFR, HER2, HER3 and HER4 by analyzing their promoter sequences using MatInspector online software (http://www.genomatix.de/online_help/help_matinspector/matinspector_help). Thus, we attempted to determine whether oncogenic role of EHF in gastric cancer is associated with the activation of HER family. As shown in , EHF exp […]

library_books

Increased expression of EHF contributes to thyroid tumorigenesis through transcriptionally regulating HER2 and HER3

2016
Oncotarget
PMCID: 5295405
PMID: 27517321
DOI: 10.18632/oncotarget.11154

[…] tors including EGFR (HER1/ErbB1), HER2 (ErbB2), HER3 (ErbB3) and HER4 (ErbB4) plays a critical role in tumorigenesis including thyroid cancer [–]. Using MatInspector online software (www.genomatix.de/online_help/help_matinspector/matinspector_help), we found several potential ETS binding sites (EBS, 5′-GGAA/T-3′) in their promoter regions. We thus speculate that oncogenic role of EHF in thyroid tu […]

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Online Help institution(s)
Center for Disease Control and Prevention, Atlanta, GA, USA

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