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Oqtans | The RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis

It is based on the Galaxy-framework and provides tools for read mapping, transcript reconstruction and quantitation as well as differential expression analysis.

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Oqtans classification

Oqtans specifications

Unique identifier:
Software type:
Restrictions to use:
Operating system:
Unix/Linux, Mac OS
GNU General Public License version 2.0
Online quantitative transcriptome analysis
Command line interface
Biological technology:
Programming languages:
C, C++, Java, MATLAB, Perl, Python, R
Computer skills:

Oqtans distribution


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Oqtans support


  • Gunr Rätsch <>


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Computational Biology Center, Memorial Sloan-Kettering Cancer Center, New York, NY, USA; Machine Learning in Biology Group, Friedrich Miescher Laboratory, Tübingen, Germany; LINA, Combinatorics and Bioinformatics Group, University of Nantes, Nantes, France; Machine Learning/Intelligent Data Analysis Group, Technical University, Berlin, Germany; Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany

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