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Onto-Compare specifications

Information


Unique identifier OMICS_18287
Name Onto-Compare
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained No

Maintainer


This tool is not available anymore.

Additional information


http://vortex.cs.wayne.edu/Onto-Tools%20User%20Manual/Onto-Compare/Onto-Compare.html

Publications for Onto-Compare

Onto-Compare in publications

 (5)
PMCID: 3557386
PMID: 23146664
DOI: 10.1016/j.bcp.2012.10.026

[…] both the cell lines. analysis of microarray data was performed using various available programs, including pathway studio ariadne software (ariadne, rockville, md, http://www.ariadnegenomics.com), onto-compare (intelligent systems and bioinformatics laboratory, wayne state university, http://vortex.cs.wayne.edu), and mappfinder (gladstone institutes, university of california, […]

PMCID: 2169220
PMID: 17883846
DOI: 10.1186/1476-9255-4-18

[…] normalised rma values, unsupervised average linkage hierarchical cluster analysis was performed []. functional annotation of differentially expressed genes was curated via the publicly available onto-compare and gene-ontology (go) databases []., following breeding, tgfβ1 expression was confirmed by pcr amplification in tr+ tgfβ1 transgenic mice (figure ). to determine the effect of the tgfβ1 […]

PMCID: 1803771
PMID: 17295923
DOI: 10.1186/1471-2474-8-12

[…] unsupervised average linkage hierarchical cluster analysis was performed []. a list of 1092 developmental genes represented on the affymetrix hgu133a oligonucleotide microarray was curated via the onto-compare and gene-ontology (go) databases []., real time rt-pcr was performed on a taqman abi 7700 sequence detection system® (appliedbiosystems, weiterstadt, germany) using heat activated taqdna […]

PMCID: 1569837
PMID: 16948840
DOI: 10.1186/1465-9921-7-114

[…] using normalised rma values and unsupervised average linkage hierarchical cluster analysis, a list of 312 extracellular matrix (ecm) proteins or modulators of matrix turnover was curated via onto-compare and gene-ontology (go) databases for baited cluster analysis of ecm associated genes., interrogation of the dataset using ontological classification focused cluster analysis revealed […]

PMCID: 1160233
PMID: 15980579
DOI: 10.1093/nar/gki472

[…] re-use, please contact [email protected], the onto-tools suite is composed of an annotation database and six seamlessly integrated, web-accessible data mining tools: onto-express, onto-compare, onto-design, onto-translate, onto-miner and pathway-express. the onto-tools database has been expanded to include various types of data from 12 new databases. our database […]


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Onto-Compare institution(s)
Department of Computer Science, Wayne State University, Detroit, MI, USA; Department of Obstetrics and Gynecology, Karmanos Cancer Institute, Detroit, MI, USA; Department of Molecular Biology and Genetics, Karmanos Cancer Institute, Detroit, MI, USA
Onto-Compare funding source(s)
Supported by the NSF grant number NSF- 0234806, USMRMC grant number DAMD17-03-2-0035, NIH grant numbers RO1-NS045207-01 and R21-EB000990-01, and Michigan Life Sciences Corridor grant number MLSC-27.

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