Onto-Express

[…] of one group (wt or rgs9-deficient mice) [21]. statistical testing was done using a two-tailed student’s t-test. for gene ontology profiling, mas5 normalized data with p≤0.01 were subjected to the onto express algorithm [22]–[23]. the settings were: hypergeometric distribution, correction for false discovery rate (fdr). the mas5 processed data were also analyzed using the gene set enrichment […]

[…] diseased (ms) and control (normal siblings) samples. the ms samples were 8923, 8922 a, 8830, 8839, 9013 and 9016, respectively. the unaffected siblings were 9017, 9018, 9023 and 8921a, respectively. onto-express analyses depicted in figure 4 shows that transcription factor binding is a highly significant component in our microarray data. results from pathway-express analysis are listed in table […]

[…] (the database for annotation, visualization and integrated discovery) [59]., pathway classification of the differentially expressed genes was performed using the pathway express tool available in onto-express [60]. enriched pathways among the differentially expressed genes below a p-value of 0.1 were identified and those associated with mammary gland development are listed in table 1. […]