Onto-Tools pipeline

Onto-Tools specifications

Information


Unique identifier OMICS_26182
Name Onto-Tools
Alternative name ROnto Tools
Interface Web user interface
Restrictions to use None
Computer skills Basic
Maintained No

Documentation


Maintainers


This tool is not maintained anymore.

Additional information


https://bioconductor.org/packages/release/bioc/vignettes/ROntoTools/inst/doc/rontotools.pdf

Information


Unique identifier OMICS_26182
Name Onto-Tools
Alternative name ROnto Tools
Software type Package/Module, Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 2.6.0
Stability Stable
Requirements methods, graph, boot, KEGGREST, KEGGgraph, Rgraphviz
Maintained Yes

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Versioning


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Documentation


Maintainers


  • person_outline Sorin Draghici <>
  • person_outline Calin Voichita <>

Additional information


https://bioconductor.org/packages/release/bioc/vignettes/ROntoTools/inst/doc/rontotools.pdf

Publication for Onto-Tools

Onto-Tools IN pipeline

2007
PMCID: 2034543
PMID: 17822553
DOI: 10.1186/1750-9378-2-16

[…] the biological meaning of changes in gene expression, genes examined by significance analysis of microarrays (sam) were submitted to the visualization tool pathway express (pe, a component of onto-tools suite). this recently developed bioinformatic tool is employed for visualizing expression data in the context of kegg biological pathways, the importance pe is that retrieves an impact […]

Onto-Tools institution(s)
Department of Computer Science, Wayne State University, MI, USA; Department of Obstetrics and Gynecology, Karmanos Cancer Institute, Detroit, MI, USA; Department of Molecular Biology and Genetics, Karmanos Cancer Institute, Detroit, MI, USA
Onto-Tools funding source(s)
Supported by the NSF grant number NSF0234806, USMRMC grant number DAMD17-03-2-0035, NIH grant numbers RO1-NS045207-01 and R21-EB000990-01, and Michigan Life Sciences Corridor grant number MLSC-27.

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