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OntoBrowser specifications

Information


Unique identifier OMICS_12763
Name OntoBrowser
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License Apache License version 2.0
Computer skills Medium
Version 1.0
Stability Stable
Requirements
Wildfly, Graphviz, Apache Maven, MySQL, Oracle
Maintained Yes

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Publication for OntoBrowser

OntoBrowser citations

 (3)
library_books

Generating Modeling Data From Repeat Dose Toxicity Reports

2017
Toxicol Sci
PMCID: 5837688
PMID: 29155963
DOI: 10.1093/toxsci/kfx254

[…] The ontologies used to annotate histopathology findings (ie, the anatomy ontology and histopathology ontology) were stored centrally within the eTOX project using a tool called OntoBrowser (). The anatomy ontology is an extended version of the Adult Mouse Anatomy (; ) while the histopathology ontology was built by the eTOX Consortium and aligned to INHAND (). A massive curat […]

library_books

Use of Biomedical Ontologies for Integration of Biological Knowledge for Learning and Prediction of Adverse Drug Reactions

2017
PMCID: 5398297
PMID: 28469412
DOI: 10.1177/1177625017696075

[…] ch as SEND (Standard for Exchange of Nonclinical Data) and a CDISC Standard Data Tabulation Model (SDTM) standard for presenting nonclinical data. The eTOX consortium developed a curation tool called OntoBrowser that maps terms from their database to ontologies. In addition to OntoBrowser, the consortium developed a number of tools that they have made publicly available. These include LIBRARY that […]

library_books

A Gross Anatomy Ontology for Hymenoptera

2010
PLoS One
PMCID: 3012123
PMID: 21209921
DOI: 10.1371/journal.pone.0015991

[…] Ontology Lookup Service , and BioPortal , . Several other partnerships are underway, including the employment of the HAO to guide image searches within Morphbank, and the integration of the HAO with Ontobrowser, through Morphster.org ). Following the approach taken by Phenoscape , the HAO is also being used within Phenex to annotate new and previously published morphological matrices to build a […]

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OntoBrowser institution(s)
PreClinical Safety, Translational Sciences, Novartis Institute for Biomedical Research, Basel, Switzerland
OntoBrowser funding source(s)
This work was supported by the Innovative Medicines Initiative Joint Under taking [115002], resources of which are composed of financial contribution from the European Union's Seventh Framework Programme [FP7/2007-2013] and EFPIA companies in kind contribution.

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