Ontodog statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Ontodog
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Tool usage distribution map

This map represents all the scientific publications referring to Ontodog per scientific context
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Protocols

Ontodog specifications

Information


Unique identifier OMICS_13226
Name Ontodog
Interface Web user interface
Restrictions to use None
Input data Source ontology information and tagged terms of interest
Input format HTML, XLS
Output data Ontology community view
Output format RDF/XML, OWL
License Apache License version 2.0
Computer skills Basic
Version 1.0
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Yongqun He

Publication for Ontodog

Ontodog citations

 (4)
call_split

ONS: an ontology for a standardized description of interventions and observational studies in nutrition

2018
PMCID: 5928560
PMID: 29736190
DOI: 10.1186/s12263-018-0601-y
call_split See protocol

[…] s://fairsharing.org/bsg-s001068).To enhance interoperability with other ontologies, the ONS builds on a subset of the Ontology for Biomedical Investigations (OBI) []. The subset was created using the ONTODOG tool [] and is composed of all terms relevant to nutritional investigations and extended also in accordance with the bioinformatics infrastructure of ENPADASI. Moreover, this assured the adopt […]

library_books

The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability

2018
J Biomed Semantics
PMCID: 5765662
PMID: 29329592
DOI: 10.1186/s13326-017-0169-2

[…] pment is typically tedious and inefficient, especially when the structure of ontology is enormous. Over the years, we have developed a collection of web-based “Ontoanimal” tools including Ontofox [], Ontodog [], Ontorat [], Ontobee [], Ontobeep [], Ontobull [], Ontokiwi [], and Ontobat []. Each Ontoanimal tool has its specific functions, and the collective use of these tools enables users to cover […]

call_split

The Ontology of Biological and Clinical Statistics (OBCS) for standardized and reproducible statistical analysis

2016
J Biomed Semantics
PMCID: 5024438
PMID: 27627881
DOI: 10.1186/s13326-016-0100-2
call_split See protocol

[…] OBCS imports the subset of OBI consisting of all statistics-related terms and associated parent terms using the Ontodog tool []. The Excel input data used for this purpose is available at: https://github.com/obcs/obcs/raw/master/docs/OBI_statisitics_subset.xlsx. To ensure valid reasoning, Ontodog was set to imp […]

call_split

OBIB a novel ontology for biobanking

2016
J Biomed Semantics
PMCID: 4855778
PMID: 27148435
DOI: 10.1186/s13326-016-0068-y
call_split See protocol

[…] owl or biobank.owl: OMIABIS or BO specific terms.import_OBI_subset.owl: OBI subset upon which OMIABIS or BO was built containing terms needed from both IAO and OBI. The OBI subset was retrieved using Ontodog, a tool that can retrieve a set of terms of interest and all related axioms from a source ontology [].import_OBO.owl: terms defined in external OBO Foundry ontologies and retrieved using OntoF […]


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Ontodog institution(s)
Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA; Unit for Laboratory Animal Medicine, Department of Microbiology and Immunology, Center for Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA
Ontodog funding source(s)
This project was funded by the National Institute of Health (grants R01AI081062 and 5R01GM93132) and the Rackham Pilot Research grant in the University of Michigan.

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