Ontorat specifications


Unique identifier OMICS_25576
Name Ontorat
Interface Web user interface
Restrictions to use None
Input format txt, xlsx
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Yongqun He <>

Publication for Ontorat

Ontorat in publications

PMCID: 5765662
PMID: 29329592
DOI: 10.1186/s13326-017-0169-2

[…] critical to ensure ontology interoperability and the usage of interoperable ontologies for standardized data representation and integration. the suite of web-based ontoanimal tools (e.g., ontofox, ontorat, and ontobee) support different aspects of extensible ontology development. by summarizing the common features of ontoanimal and other similar tools, we identified and proposed an “extensible […]

PMCID: 5763303
PMID: 29322929
DOI: 10.1186/s12918-017-0510-5

[…] web ontology language (owl2) (https://www.w3.org/tr/owl-guide/). ontofox (http://ontofox.hegroup.org/) [] was used to extract subsets of related terms from different ontologies. in addition, we used ontorat (http://ontorat.hegroup.org/) [] to quickly add the annotations and relations between different entities., the ocmr project website is located […]

PMCID: 5763302
PMID: 29322930
DOI: 10.1186/s12859-017-1981-5

[…] to ensure accurate information matches. if existed, multiple members of the same cell line name or synonym were consolidated into a singular lincs cell identifier., based on the new design patterns, ontorat [] was used to incorporate lincs cell line data from different data sources to clo. two steps were performed. the first step was to add to existing clo cell lines with new data obtained […]

PMCID: 5653862
PMID: 29061976
DOI: 10.1038/s41598-017-12580-4

[…] drug products and drug ingredients are aligned under bfo:material entity branch, and the moas are aligned under the bfo:role branch. after the two ontology subsets are aligned under ocvdae, we used ontorat (http://ontorat.hegroup.org/) to automatically generate annotations (e.g., chinese drug names) and axioms that link drugs with aes in ocvdae. the input files of the ontorat operation […]

PMCID: 4875649
PMID: 27213033
DOI: 10.1186/s13326-016-0069-x

[…] ontology subsets under the odnae ontology hierarchical structure. once the top level terms are aligned, the middle and bottom level ontology terms will be aligned automatically. in addition, we used ontorat, another internally developed web-based program (http://ontorat.hegroup.org/) [], to assign rxnorm and ndf-rt identifiers to corresponding dron drug terms using the annotation property […]

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Ontorat institution(s)
University of Michigan, Ann Arbor, MI, USA; University of Pennsylvania, Philadelphia, PA, USA
Ontorat funding source(s)
Supported by the National Institutes of Health (NIH) grants 1R01AI081062 from the National Institute of Allergy and Infectious Diseases (NIAID).

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