ooTFD specifications


Unique identifier OMICS_28538
Name ooTFD
Alternative name object-oriented Transcription Factors Database
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes


  • person_outline David Ghosh

Publications for object-oriented Transcription Factors Database

ooTFD citation


Characterization of the histone H2A.Z 1 and H2A.Z 2 isoforms in vertebrates

BMC Biol
PMCID: 2805615
PMID: 20003410
DOI: 10.1186/1741-7007-7-86
call_split See protocol

[…] ed from the alignments of mammalian H2A.Z-1 and H2A.Z-2 sequences by using the program Transcription Regulatory Element Search (TRES, to perform searches in the object-oriented transcription factors database (ooTFD) []. Phylogenetic relationships among H2A.Z promoter regions were reconstructed using the neighbour-joining method using uncorrected nucleotide p- […]

ooTFD institution(s)
Institute for Transcriptional Informatics, Pittsburgh, PA, USA
ooTFD funding source(s)
Supported in part by a gift from Procter & Gamble Co., the facilities of the National Biomedical Computation Resource (NIH RR-08605) at the San Diego Supercomputer Center, and by the facilities of the Biomolecular Engineering Research Center at Boston university.

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