OPAAS statistics

You need an account to access this content

info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Pairwise structure alignment Repetitive element prediction chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

OPAAS specifications

Information


Unique identifier OMICS_11567
Name OPAAS
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publication for OPAAS

OPAAS in publications

 (6)
PMCID: 4819879
PMID: 26528822
DOI: 10.1080/00223891.2015.1089247

[…] to mental health treatment varies highly among refugee patients. research has not established which factors relate to differences in outcome. this study is a follow-up of opaas and hartmann's (2013) rorschach inkblot method (rim; exner, 2003) pretreatment study of traumatized refugees, where 2 rim principal components, trauma response and reality testing, were found […]

PMCID: 3817169
PMID: 24223749
DOI: 10.1371/journal.pone.0077995

[…] them as carbon and phosphorus source . several organophosphorus hydrolases (ophs) have been identified so far, belonging to different protein families: the organophosphorus acid anhydrolases (opaas; ec 3.4.13.9) related to the prolidases , , the paraoxonases (pons; ec 3.1.8.1) , the phosphotriesterases (ptes; ec 3.1.8.1) and the phosphotriesterase-like lactonases (plls; ec 3.1.1.81) […]

PMCID: 2994741
PMID: 21152439
DOI: 10.1371/journal.pone.0014138

[…] of rtb ., δr = rii−ri and δs = sii−si;, <r> = (ri+rii) and <s> = (si+sii)., for the five representative proteins, the first domains are superposed to their second domains with the aid of opaas and the root-mean-square distances (rmsd) are all less than 2å (), i.e., the first and second domains have similar structures. therefore, the symmetry degrees of the first and second domains […]

PMCID: 3724480
PMID: 20122220
DOI: 10.1186/1471-2105-11-S1-S46

[…] proteins at a coarse level of secondary structures [-]. prosmos [] and tableausearch [] both try to match the orientation between secondary structure elements (sses). rather than only using angles, opaas [,,] uses a probability-based method to align the angle-distance map of sses. mainly, these programs look for similarities in the geometry of interactions between the secondary structural […]

PMCID: 2213659
PMID: 18005453
DOI: 10.1186/1472-6807-7-78

[…] developed to produce multiple structure alignments; gangsta [] and scali [] were suggested to be used for structure classification; ssm [] and kenobi [] appear to be computationally efficient and opaas [] was applied to analysis of alternative structure alignments. topofit compares topologies of delaunay tessellation patterns calculated using positions of cα-atoms in protein structures […]

OPAAS institution(s)
Institute of Biomedical Sciences, Academia Sinica Taipei, Taiwan

OPAAS reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review OPAAS