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OPAAS specifications


Unique identifier OMICS_11567
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No


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Publication for OPAAS

OPAAS in publications

PMCID: 4819879
PMID: 26528822
DOI: 10.1080/00223891.2015.1089247

[…] to mental health treatment varies highly among refugee patients. research has not established which factors relate to differences in outcome. this study is a follow-up of opaas and hartmann's (2013) rorschach inkblot method (rim; exner, 2003) pretreatment study of traumatized refugees, where 2 rim principal components, trauma response and reality testing, were found […]

PMCID: 3817169
PMID: 24223749
DOI: 10.1371/journal.pone.0077995

[…] them as carbon and phosphorus source . several organophosphorus hydrolases (ophs) have been identified so far, belonging to different protein families: the organophosphorus acid anhydrolases (opaas; ec related to the prolidases , , the paraoxonases (pons; ec , the phosphotriesterases (ptes; ec and the phosphotriesterase-like lactonases (plls; ec […]

PMCID: 2994741
PMID: 21152439
DOI: 10.1371/journal.pone.0014138

[…] of rtb ., δr = rii−ri and δs = sii−si;, <r> = (ri+rii) and <s> = (si+sii)., for the five representative proteins, the first domains are superposed to their second domains with the aid of opaas and the root-mean-square distances (rmsd) are all less than 2å (), i.e., the first and second domains have similar structures. therefore, the symmetry degrees of the first and second domains […]

PMCID: 3724480
PMID: 20122220
DOI: 10.1186/1471-2105-11-S1-S46

[…] proteins at a coarse level of secondary structures [-]. prosmos [] and tableausearch [] both try to match the orientation between secondary structure elements (sses). rather than only using angles, opaas [,,] uses a probability-based method to align the angle-distance map of sses. mainly, these programs look for similarities in the geometry of interactions between the secondary structural […]

PMCID: 2213659
PMID: 18005453
DOI: 10.1186/1472-6807-7-78

[…] developed to produce multiple structure alignments; gangsta [] and scali [] were suggested to be used for structure classification; ssm [] and kenobi [] appear to be computationally efficient and opaas [] was applied to analysis of alternative structure alignments. topofit compares topologies of delaunay tessellation patterns calculated using positions of cα-atoms in protein structures […]

OPAAS institution(s)
Institute of Biomedical Sciences, Academia Sinica Taipei, Taiwan

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