Open Reading Frame Finder specifications

Information


Unique identifier OMICS_17682
Name Open Reading Frame Finder
Interface Web user interface
Restrictions to use None
Input data Accession number, gi, or nucleotide sequence.
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Information


Unique identifier OMICS_17682
Name Open Reading Frame Finder
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Open Reading Frame Finder citations

 (2)
2016
PMCID: 5176323

[…] amino acid (aa) sequences were analyzed using the basic local alignment search tool (blast), blastx, and blastn (http://blast.ncbi.nlm.nih.gov), and the open reading frame (orf) was predicted using open reading frame finder (http://www.ncbi.nlm.nih.gov/gorf/gorf.html). multiple sequence alignments were generated using clustalw2, accessed at ebi (http://www.ebi.ac.uk/tools/msa/clustalo/). […]

2012
PMCID: 3563745

[…] in another study, the isolation and identification of a novel esterase from a bac library clone with an insert size of 5.1 kb derived from yangtze river in china was reported (wu and sun 2009). open reading frame finder analysis of that insert after sequencing indicated the presence of three orfs, each >900 bp. one of the three orfs was confirmed to encode an esterase (1,479–2,747 bp) […]

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