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OpenElectrophy specifications

Information


Unique identifier OMICS_29554
Name OpenElectrophy
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License BSD 3-clause “New” or “Revised” License, CeCILL version 2.1
Computer skills Advanced
Version 0.3.6
Stability Stable
Requirements
numpy, quantities, neo, sqlalchemy, sqlalchemy-migrate, scipy, matplotlib, pyqtgraph, guidata, PyQT4, joblib, tables, pywavelets (pywt), python-sklearn, pandas, cyth
Maintained Yes

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Versioning


No version available

Documentation


Maintainer


  • person_outline Samuel Garcia

Publication for OpenElectrophy

OpenElectrophy citations

 (3)
library_books

Analyzing large scale spiking neural data with HRLAnalysis™

2014
Front Neuroinform
PMCID: 3942659
PMID: 24634655
DOI: 10.3389/fninf.2014.00017

[…] objects as data structures. Neuropy takes a more data-centric approach based on electrophysiological data (Spacek et al., ). Information is stored hierarchically based on animal, track and recording. OpenElectrophy deals with large amounts of experimental data by storing it in a MySQL database (Garcia and Fourcaud-Trocmé, ). Users can interact with OpenElectrophy through the GUI interface to visua […]

library_books

pySPACE—a signal processing and classification environment in Python

2013
Front Neuroinform
PMCID: 3871959
PMID: 24399965
DOI: 10.3389/fninf.2013.00040

[…] Makeig, ) and FieldTrip (Oostenveld et al., ) for MEG, EEG, and SPM (http://www.fil.ion.ucl.ac.uk/spm/) especially for fMRI data. Respective Python libraries are for example PyMVPA (Hanke et al., ), OpenElectrophy (Garcia and Fourcaud-Trocmé, ), and the NIPY software projects (http://nipy.org/). Additional help comes from an increasing number and complexity of signal processing and classification […]

library_books

OpenElectrophy: An Electrophysiological Data and Analysis Sharing Framework

2009
Front Neuroinform
PMCID: 2694696
PMID: 19521545
DOI: 10.3389/neuro.11.014.2009

[…] Analysis is the final stage of the OpenElectrophy workflow, which transforms the now pre-processed data into meaningful results. The OpenElectrophy framework does not provide ready-made “point-and-click” analyses for obtaining a given […]

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